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GTATGGTCTCAGTCCCATTATTGGTCCGATTTCGTTAGCTACTCTATCTGGAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttctagttttctggcatttggatccaaatttatggatgatggtgacataagtaatcaagttttgtggtatgttctgtttctgtaaattatatttc...
species | Physcomitrella patens |
transcript | PP1S10_296V6.2 |
intron # | 14 |
splice site | 5' |
intron type | U2 |
EST: GAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAG GGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCCEST: gi|162165055|gb|FC341102.1|FC341102
genomic: GAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttcta ... ttgggtgaagGGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCC
EST: AGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGNGGGCAA-GATCAG GGTCATATGGCGGACATGGTACAAAAEST: gi|18336101|gb|BJ168123.1|BJ168123
genomic: AGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTG-GGGCAAAGATCAGgtaatttcta ... ttgggtgaagGGTCATATGGCGGACATGGTACAAAA
EST: GCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAG GGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCCEST: gi|162173107|gb|FC348693.1|FC348693
genomic: GCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttcta ... ttgggtgaagGGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCC
EST: GAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAG GGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCCEST: gi|15320044|gb|BI487478.1|BI487478
genomic: GAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttcta ... ttgggtgaagGGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCC
EST: GAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAG GGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCCEST: gi|18339664|gb|BJ171691.1|BJ171691
genomic: GAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttcta ... ttgggtgaagGGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCC
EST: GCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAG GGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCC
genomic: GCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttcta ... ttgggtgaagGGTCATATGGCGGACATGGTACAAAAAGAGGTGAGATCTTTAATGAACTCC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTATGGTCTCAGTCCCATTATTGGTCCGATTTCGTTAGCTACTCTATCTGGAGGAGGCCTTGATGATACTGGTAGTTCCTTCTCCTGGGGCAAAGATCAGgtaatttctagttttctggcatttggatccaaatttatggatgatggtgacataagtaatcaagttttgtggtatgttctgtttctgtaaattatatttc
- - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA