1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' |
ATCCGAGAGGCTATCAACAGCGCAACTTCTGATTACGACAAGGAAAAGTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAGgtaaggatccatctgaagcctgttcatcgttccagtctatgatcattggagatatggcattcctgcaattaccgatgtgttgggtttgaaacttatatgattcatttcag
species | Physcomitrella patens |
transcript | PP1S52_245V6.1 |
intron # | 13 |
splice site | 5' |
intron type | U2 |
EST: AGTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAG ATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACTEST: gi|37835503|gb|BJ593515.1|BJ593515
genomic: AGTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAGgtaaggatcc ... ttcatttcagATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACT
EST: GTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAG ATCGGAGGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACEST: gi|37827871|gb|BJ585883.1|BJ585883
genomic: GTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAGgtaaggatcc ... ttcatttcagATCGGA-GGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTAC
EST: AGTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAG ATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACTEST: gi|162277341|gb|FC453147.1|FC453147
genomic: AGTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAGgtaaggatcc ... ttcatttcagATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACT
EST: GGGGGTGTTGCTGTGCTCAAG ATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACT
genomic: GGGGGTGTTGCTGTGCTCAAGgtaaggatcc ... ttcatttcagATCGGAGGAGCAAGCGAAGTTGAGGTGAGTGAAAAGAAAGATCGTGTTACT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCCGAGAGGCTATCAACAGCGCAACTTCTGATTACGACAAGGAAAAGTTGCAAGAGAGGTTGGCTAAATTATCAGGGGGTGTTGCTGTGCTCAAGgtaaggatccatctgaagcctgttcatcgttccagtctatgatcattggagatatggcattcctgcaattaccgatgtgttgggtttgaaacttatatgattcatttcag
- - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG