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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTGTATATCACAAGgtatggctatagataagattacatcctttgtagccctagtttgtttttcacttttctgaatttttttgttgatattgaagtgccacctgggttactcttttccttccgactgtgaatcactctcaccaagcgctttctgtttgtaccacag

Basic information

species Physcomitrella patens
transcript PP1S37_28V6.1
intron # 12
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S37_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: LOC_Os02g53140.1 (Oryza sativa), 5'ss of exon 12
TGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTGTATATCACAAGgtatggctatagataagattacatcctttgtagccctagtttgtttttcacttttctgaatttt-tttgttgatattgaagtgccacctgggttactcttttcc-ttccgactgtgaatcactct-caccaagcgctttctgtttgtaccacag
  |||| ||||  ||||||||||| ||||| |||||  |||||||||  || ||||| || || || ||||||||||  ||||||||||| || |||||||||    |  |       |  |  |  ||||  || || | |||  ||||   || ||     |  ||     ||  |    | | |||| |  ||  | | || |||  |||   | | |||||  |||||  ||                  
CAGAGGGCACAAGAATGAAAAGAACTTTGTTGGGCTGTCTGTAAATAACGAGTACATTGCCTGCGGGAGTGAAACGAATGAGGTTTTTGTTTACCACAAGgta--attgcaagcttattgcctgctcttgtttccgta-tctgtgattcagcattatgtgccatgcttaactgtacaggttggtctcctgtggcaccatataccattctaacttcaagtaactctgtaccaattgcag----------------

upper sequence: PP1S37_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: GRMZM2G126795_T02 (Zea mays), 5'ss of exon 14
TGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTGTATATCACAAGgtatggctatagataagattacatcctt-tgtagccctagtttgtttttcacttttctgaatttttttgttgatattgaagtgccacctgggttactcttttccttccgactgtgaatcactctcaccaagcgctttctgtttgtaccacag
  |||| ||||  ||||||||||| || || ||  |  |||| || | ||| || || |||||||| |||||||| |  ||||||||||| ||||||||||||     || |  ||| ||    | |  | | |  |  ||      | || | ||  ||  | | |  || |  ||||   |  |  || ||| ||   |||   | |  ||                                       
CAGAGGGCACAAAAATGAAAAGAACTTCGTTGGATTGTCTGTGAACAATGAGTATATTGCTTGTGGAAGTGAAACAAATGAGGTTTTTGTTTATCACAAGgta-----atcg-caagcttctggcttggtcttgttcccgtgcagcatgcattgttacga--tgtgtgattcaccttgatcagtaagatgtgttcctaacttcacactggttgcag------------------------------------

upper sequence: PP1S37_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv10s0523g00030.t01 (Vitis vinifera), 5'ss of exon 12
TGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTGTATATCACAAGgtatggctatagataagattacatcctttgtagccctagtttgtttttcacttttctgaatttttttgttgatattgaagtgccacctgggttactcttttccttccgactgtgaatcactctcaccaagcgctttctgtttgtaccacag
| |||| ||  | ||||| |||||||||||||| || || ||||| || || ||||| || |||||||||||||| | ||| || || |  |||||||||||      |||  | |     |   | ||      |||||      || | ||     ||||||| |||| |  ||| ||                                                                       
TAGAGGGCATTCAAATGAGAAGAATTTTGTGGGTCTCACAGTAAACAGCGAATACATTGCCTGTGGCAGTGAAACAAACGAAGTGTTCGCGTATCACAAGgttacaaaatacttcaagaagctagcattaggcatctagtcccaaattaattt-----aatttttgtgttcac-ttgcag-----------------------------------------------------------------------

upper sequence: PP1S37_28V6.1 (Physcomitrella patens), 5'ss of exon 12
lower sequence: Vv12s0059g01420.t01 (Vitis vinifera), 5'ss of exon 12
TGGAGGACACACCAATGAAAAGAATTTTGTGGGGCTTACTGTAAATAGTGACTACATCGCTTGTGGCAGTGAAACGAGCGAGGTTTTTGTATATCACAAGgtatggctatagataagattacatcctttgtagccctagtttgtttttcacttttctgaatttttttgttgatattgaagtgccacctgggttactcttttccttccgactgtgaatcactctcaccaagcgctttctgtttgtaccacag
  |||||||||| ||||| ||||| || ||||| ||  ||||||| ||||| || ||  |||||||||||||||| | ||| || || || || || ||||| | |   ||  | |  ||| | |      |    |  |   |||| |  || |   ||   |    |||||| | |        || ||  || ||||| ||                                               
CAGAGGACACACTAATGAGAAGAACTTCGTGGGCCTCTCTGTAAACAGTGAATATATTTCTTGTGGCAGTGAAACAAACGACGTCTTCGTCTACCATAAGgt-tagtagtacctgatcttaaaacagcc--aattttcatgcattttactattatactaagaatccatttgatagtaat------tctaggaaacgcttttactatttt------------------------------------------