1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' | 13 5' 3' | 14 5' 3' | 15 5' 3' | 16 5' 3' | 17 5' 3' | 18 5' 3' | 19 5' 3' |
TAACCTATGAGACTGATGACTCGTCTTCAGAAACTTATTTGTATGAGCGAGAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGAgtaagctcaccaccttagcctcatggtggacatgagtacgtgactttgaaatgcctcacagagttgtcatttaagtggtactctccaagagtactacgttgttatttcgcttttgtatgcagtgtgtatttcaaactagaaagtaaaggtaattgaagcaacgtgttattgtgtgcgttattttgtgttctctag
species | Physcomitrella patens |
transcript | PP1S9_317V6.2 |
intron # | 11 |
splice site | 5' |
intron type | U2 |
EST: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGA GTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTTEST: gi|162242963|gb|FC416472.1|FC416472
genomic: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGAgtaagctcac ... tgttctctagGTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTT
EST: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGA GTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTTEST: gi|162174855|gb|FC351647.1|FC351647
genomic: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGAgtaagctcac ... tgttctctagGTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTT
EST: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGA GTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTTEST: gi|100442763|gb|BY981588.1|BY981588
genomic: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGAgtaagctcac ... tgttctctagGTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTT
EST: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGA GTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTT
genomic: GAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGAgtaagctcac ... tgttctctagGTACAAACTGGGAAAAGTCCATTCTCATGTTATTAAATCGAGAGATGGCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TAACCTATGAGACTGATGACTCGTCTTCAGAAACTTATTTGTATGAGCGAGAATCGAGAAAGATGTCGTTGCTGTTTCAGCATCATCCTCAACTAAACGAgtaagctcaccaccttagcctcatggtggacatgagtacgtgactttgaaatgcctcacagagttgtcatttaagtggtactctccaagagtactacgttgttatttcgcttttgtatgcagtgtgtatttcaaactagaaagtaaaggtaattgaagcaacgtgttattgtgtgcgttattttgtgttctctag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGTT