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AAGGAATTACATTGAAGATCTGCTTAGCAAAATCCGCACACAAGTGTTGCTGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaacctttcaggccatttccttgatgcatgtagtgaatactggctactagaatggctctcacatactgctttgagttcgattttgaattctttggatt...
species | Physcomitrella patens |
transcript | PP1S90_192V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAG GAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATCEST: gi|162172074|gb|FC347963.1|FC347963
genomic: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaaccttt ... tggcgtgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
EST: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAG GAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATCEST: gi|67699610|gb|BJ959843.1|BJ959843
genomic: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaaccttt ... tggcgtgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
EST: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAG GAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATCEST: gi|162264897|gb|FC440672.1|FC440672
genomic: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaaccttt ... tggcgtgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
EST: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAG GAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATCEST: gi|162247841|gb|FC419469.1|FC419469
genomic: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaaccttt ... tggcgtgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
EST: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAG GAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATCEST: gi|162247842|gb|FC419470.1|FC419470
genomic: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaaccttt ... tggcgtgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
EST: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAG GAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
genomic: TGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaaccttt ... tggcgtgcagGAGCTGAACATACCTGAAAAGGATGTGGAGCAGCTTCTTGTATCTCTCATC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AAGGAATTACATTGAAGATCTGCTTAGCAAAATCCGCACACAAGTGTTGCTGAAGCTCATCAAGCCTTATACCCGAATTCGCATTCCCTTTATATCTAAGgtgaacctttcaggccatttccttgatgcatgtagtgaatactggctactagaatggctctcacatactgctttgagttcgattttgaattctttggatt
- - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA