1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GCAATCGAGATTGGCTCTTTACCATGGTGTAAGAGCTATACACATTAAATTCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgcttgtttgcttgtttgctcgtttttcctttcttctaacttctttgcggaaccctttagtttaaatgaaattgttccaaagattcctctgtt...
species | Physcomitrella patens |
transcript | PP1S318_21V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|18339668|gb|BJ171695.1|BJ171695
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|162223832|gb|FC400086.1|FC400086
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|162173131|gb|FC348704.1|FC348704
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|208351340|gb|DC922091.1|DC922091
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|37829503|gb|BJ587515.1|BJ587515
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|162256309|gb|FC432319.1|FC432319
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|37836919|gb|BJ594927.1|BJ594927
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|18337336|gb|BJ169360.1|BJ169360
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|208348104|gb|DC916914.1|DC916914
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|162155346|gb|FC331245.1|FC331245
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|162202021|gb|FC377227.1|FC377227
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|18337218|gb|BJ169242.1|BJ169242
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|37822742|gb|BJ580808.1|BJ580808
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAANCGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATANTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|162158980|gb|FC334827.1|FC334827
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGAEST: gi|208363112|gb|DC954326.1|DC954326
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
EST: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAG AAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
genomic: TCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgc ... ttctaaacagAAAAAAGGTATGGTCCAAGATGGCGAAGAGGTTGCTTTGGTGCAAAGTGGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAATCGAGATTGGCTCTTTACCATGGTGTAAGAGCTATACACATTAAATTCACAAACGACGCGGAGGAGACGTTTAATTATGCGCTCAGCATACTGCAGgttagtttgcttgtttgcttgtttgctcgtttttcctttcttctaacttctttgcggaaccctttagtttaaatgaaattgttccaaagattcctctgtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaatgaaa