1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CTTTACGACTTCGCCAGCAATTGCCATTCCTAAAGCAATCTCTCGGGCTGGGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctgcgattatcactgcaggtctccttagtgctgttctcggctacaaacatgatcattatgtggaaatgcgtcattaatttattttttattttattttatttatttatttttttaattgaatcccttgtcctattttgcag
species | Physcomitrella patens |
transcript | PP1S160_44V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|18333054|gb|BJ165068.1|BJ165068
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208357273|gb|DC949903.1|DC949903
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208372747|gb|DC952634.1|DC952634
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|67724453|gb|BJ974712.1|BJ974712
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|37824997|gb|BJ583063.1|BJ583063
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|67727140|gb|BJ977399.1|BJ977399
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|37828592|gb|BJ586604.1|BJ586604
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|22132646|gb|BQ827270.1|BQ827270
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|162173639|gb|FC349607.1|FC349607
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208385682|gb|DC952843.1|DC952843
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGATCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|18335246|gb|BJ167264.1|BJ167264
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|15320244|gb|BI488011.1|BI488011
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: AATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|162166658|gb|FC343550.1|FC343550
genomic: AATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208375552|gb|DC945111.1|DC945111
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|37838686|gb|BJ596694.1|BJ596694
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208362030|gb|DC950479.1|DC950479
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|40781593|gb|AJ583523.1|AJ583523
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|162177571|gb|FC352429.1|FC352429
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|162231216|gb|FC407003.1|FC407003
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|37837476|gb|BJ595484.1|BJ595484
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208389390|gb|DC953228.1|DC953228
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|162177570|gb|FC352428.1|FC352428
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|22492620|gb|BU052543.1|BU052543
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208362110|gb|DC943523.1|DC943523
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|67728109|gb|BJ978368.1|BJ978368
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208367940|gb|DC955375.1|DC955375
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208353436|gb|DC922490.1|DC922490
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|162258772|gb|FC434571.1|FC434571
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|19782978|gb|BQ039945.1|BQ039945
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGEST: gi|208388349|gb|DC949321.1|DC949321
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCGEST: gi|208368091|gb|DC947651.1|DC947651
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
EST: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCT GTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
genomic: GGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctg ... tattttgcagGTGGTCTCAGTGGCAAATCAGCAAATATTGAAACTGAAACCG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CTTTACGACTTCGCCAGCAATTGCCATTCCTAAAGCAATCTCTCGGGCTGGGATTGATCAATCACAAGTGGATTTCTATGAAATCAATGAAGCCTTTGCTgtaagttctgcgattatcactgcaggtctccttagtgctgttctcggctacaaacatgatcattatgtggaaatgcgtcattaatttattttttattttattttatttatttatttttttaattgaatcccttgtcctattttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGAAGC