1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GTTTCCAAGGCAGGCACGGTGAAGGTTGAAAAATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACGgtactgatcccccccccccccacattatagttaatcttgatggtacaaagacctttgaacagagaatgttgaatgcacttcccttctcgtccttgttttg...
species | Physcomitrella patens |
transcript | PP1S154_79V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACG GTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCAEST: gi|162255049|gb|FC430922.1|FC430922
genomic: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACGgtactgatcc ... gaggacacagGTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCA
EST: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACG GTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCAEST: gi|162161934|gb|FC338517.1|FC338517
genomic: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACGgtactgatcc ... gaggacacagGTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCA
EST: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACG GTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCAEST: gi|162189607|gb|FC365829.1|FC365829
genomic: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACGgtactgatcc ... gaggacacagGTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCA
EST: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACG GTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCA
genomic: AATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACGgtactgatcc ... gaggacacagGTGACAGGAGAGCTATTAGACGAGCTTTCTAGTTGGGATGCACTACGGGCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTTCCAAGGCAGGCACGGTGAAGGTTGAAAAATTGATGGAGGTGGAGCGGTATTCACATGTGATGCACATCAGCTCCACGgtactgatcccccccccccccacattatagttaatcttgatggtacaaagacctttgaacagagaatgttgaatgcacttcccttctcgtccttgttttg
- - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - TGGAGG
- - - - - - - - - - - - - - - - - - - - GGTGGA
- - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAGCTC