1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CAACATTTAGGCGAGATGATGACATTGGGAACAAATGATGGATCAGTCTCCTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttccttcttacttcctttatttgttttttacaaaggaaaccacttccgtcgttgattttagaatccagcctgagggtacaatcaagtgaaatgcttgtctccctttggcacattactgtcttgggtatctgttcttatgattctcttttgtggaccgtccgcag
species | Physcomitrella patens |
transcript | PP1S101_241V6.1 |
intron # | 10 |
splice site | 5' |
intron type | U2 |
EST: GATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|162174305|gb|FC350688.1|FC350688
genomic: GATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|18341459|gb|BJ173494.1|BJ173494
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|37826602|gb|BJ584614.1|BJ584614
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|162178308|gb|FC354714.1|FC354714
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|162230978|gb|FC407233.1|FC407233
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|208381969|gb|DC923465.1|DC923465
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCAEST: gi|208392952|gb|DC928638.1|DC928638
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
EST: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGG CGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
genomic: CTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttcct ... ccgtccgcagCGAGGAAGCTTGCATATTTGTATCGCCTCCCAACTAACGAGCACAGAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACATTTAGGCGAGATGATGACATTGGGAACAAATGATGGATCAGTCTCCTTGAGCTTTATCGAGGGTGTTACCCTTGATGGATTCTTGGGACACCAGGgtacgttccttcttacttcctttatttgttttttacaaaggaaaccacttccgtcgttgattttagaatccagcctgagggtacaatcaagtgaaatgcttgtctccctttggcacattactgtcttgggtatctgttcttatgattctcttttgtggaccgtccgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - GAGCTT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA