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GCTTCGAAGTTCAGCCGGTTCTTGTGAAAGTTTGCAATCCAGCTGCTGCCCAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataaccagactatgtgctcattgtggagttctgtgagatgaagagtgcgagaattattaattcgaagttcacataggctgtttcactggctgccat...
species | Physcomitrella patens |
transcript | PP1S9_317V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|100406113|gb|BY991546.1|BY991546
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|18348656|gb|BJ180705.1|BJ180705
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|18326367|gb|BJ158366.1|BJ158366
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|208396371|gb|DC911946.1|DC911946
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|18371720|gb|BJ203322.1|BJ203322
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|18361383|gb|BJ193449.1|BJ193449
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|100356505|gb|BY946399.1|BY946399
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|18363933|gb|BJ196005.1|BJ196005
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCGCAEST: gi|18359965|gb|BJ192026.1|BJ192026
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|100418237|gb|BY993400.1|BY993400
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACAEST: gi|18327914|gb|BJ159918.1|BJ159918
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
EST: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCG CTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
genomic: CAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataacc ... acgtttgtagCTCCTTAACAACAACTTGTTCAAATCTGGGCCTGGATCACAAGTTTCCACA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTCGAAGTTCAGCCGGTTCTTGTGAAAGTTTGCAATCCAGCTGCTGCCCAATTCGCATCCGAGGGCTGCCGGAGCAGAATCCAGACTTGGGGATTTCGgtacataaccagactatgtgctcattgtggagttctgtgagatgaagagtgcgagaattattaattcgaagttcacataggctgtttcactggctgccat
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG