Skip to another splice site:
1  
 5'  3'   		2  
 5'  3'   		3  
 5'  3'   		4  
 5'  3'   

Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AAGGAGCTTCTGAAGAAGCGGAAAATCACGGGGCTGTGCATCAAGAGTCGGAGGTTTCAAGTCGGCAACCGGGACTGCCGACTCATCGTGTATCCGCGAGgtacattctttggccgctgtggcactcgcaatgcagggccgctttcggacgttggtgtgcactttgaatgtgggctgctcgtgtgggtgggatgggtgag...

Basic information

species Physcomitrella patens
transcript PP1S86_237V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S86_237V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA06G07050.1 (Glycine max), 5'ss of exon 1
AAGGAGCTTCTGAAGAAGCGGAAAATCACGGGGCTGTGCATCAAGAGTCGGAGGTTTCAAGTCGGCAACCGGGACTGCCGACTCATCGTGTATCCGCGAGgta--cattctttggccgctgtggcactcgcaatgcagggccgctttcggacgttggtgtgcact-ttgaatgtgggctgctcgtgtgggtgggatgggtgag
|||||  | ||||||||| |||||||||||||  |||||||||||||  ||||||||||  | |||||  |||| || ||||| || || || ||  |||||   || | ||    | | |     ||   |  |            |    | |   |   |   ||   |||  | |  | |     |||   |  |||||
AAGGATTTGCTGAAGAAGAGGAAAATCACGGGCTTGTGCATCAAGAGCAGGAGGTTTCAGATTGGCAATAGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgttctttcccggcaaatcttttatcgttttctgtgcaccacttgcttaggcttatcgttagctgtcagatatttgct---gtgttgtcagtgag

upper sequence: PP1S86_237V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: GLYMA04G06960.1 (Glycine max), 5'ss of exon 1
AAGGAGCTTCTGAAGAAGCGGAAAATCACGGGGCTGTGCATCAAGAGTCGGAGGTTTCAAGTCGGCAACCGGGACTGCCGACTCATCGTGTATCCGCGAGgtacat----tctttggccg-------ctgtggcactcgcaatgcagggccgctttcggacgttggtgtgcactttgaatgtgggctgctcgtgtgggtgggatgggtgag
|||||  | ||||||||| ||||||| ||||| ||||||||||||||  ||||||||||  | || || ||||| || ||||| || || || ||  |||||        | |||| |||        | |  |  |  |  ||||        || ||    | ||  ||   |   || |   |||    |||  |||           
AAGGATTTGCTGAAGAAGAGGAAAATTACGGGTCTGTGCATCAAGAGCAGGAGGTTTCAGATTGGTAATCGGGATTGTCGACTTATTGTTTACCCTAGAGgtgtgcaatgtttttgcccggcaaatcttttatcgttttctgtgcaccatttgcttaggcttatagttagc-tatcagatatatactgtgt-tgtttgtgaa---------

upper sequence: PP1S86_237V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ25012 (Selaginella moellendorffii), 5'ss of exon 1
AAGGAGCTTCTGAAGAAGCGGAAAATCACGGGGCTGTGCATCAAGAGTCGGAGGTTTCAAGTCGGCAACCGGGACTGCCGACTCATCGTGTATCCGCGAGgtacattctttggccgctgtggcactcgcaatgcagggccgctttcggacgttggtgtgcactttgaatgtgggctgctcgtgtgggtgggatgggtgag
|| || || |||||||||||||  ||||||||||| ||||| |||||   | | |||||||| ||||| |||||||| || || || || ||||| |||||||  |   |      || ||     ||   ||  | |    | |   | |  |                                              
AAAGATCTGCTGAAGAAGCGGAGGATCACGGGGCTTTGCATTAAGAGCAAGCGATTTCAAGTTGGCAATCGGGACTGTCGCCTTATTGTCTATCCTCGAGgtatgtaactgtttatctctgctctacgacctgacgtgtttttgtaaaatgcag----------------------------------------------

upper sequence: PP1S86_237V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ15334 (Selaginella moellendorffii), 5'ss of exon 1
AAGGAGCTTCTGAAGAAGCGGAAAATCACGGGGCTGTGCATCAAGAGTCGGAGGTTTCAAGTCGGCAACCGGGACTGCCGACTCATCGTGTATCCGCGAGgtacattctttggccgctgtggcactcgcaatgcagggccgctttcggacgttggtgtgcactttgaatgtgggctgctcgtgtgggtgggatgggtgag
|| || || |||||||||||||  ||||||||||| ||||| |||||   | | |||||||| ||||| |||||||| || || || || ||||| |||||||  |   |      || ||     ||   ||  | |    | |   | |  |                                              
AAAGATCTGCTGAAGAAGCGGAGGATCACGGGGCTTTGCATTAAGAGCAAGCGATTTCAAGTTGGCAATCGGGACTGTCGTCTTATTGTCTATCCTCGAGgtatgtaactgtttatctctgctctacgacctgacgtgtttttgtaaaatgcag----------------------------------------------