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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCTTGATTCACTCATCTCTGCGGTTGTCCTCACTTACAAGGCCTCCCCATCCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTAgtaagcaaagctccttgctcacctcttgatgatggattgtccaggccccttcacataatcggtggttattctgtcttgcaatctttcgcacacggccaat...

Basic information

species Physcomitrella patens
transcript PP1S79_76V6.2
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|18352737|gb|BJ184792.1|BJ184792
EST:     CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTA                         ACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTCGCCCCTT
genomic: CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTAgtaagcaaag ... tgttgtgcagACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTTGCCCCTT
EST: gi|18374197|gb|BJ205775.1|BJ205775
EST:     CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTA                         ACGGAGAATCTCGTTACTAAGATTGCAACTCTGCGAGAAGACTTGCCCCTT
genomic: CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTAgtaagcaaag ... tgttgtgcagACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTTGCCCCTT
EST: gi|18330046|gb|BJ162052.1|BJ162052
EST:     CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTA                         ACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTTGCCCCTT
genomic: CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTAgtaagcaaag ... tgttgtgcagACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTTGCCCCTT
EST: gi|18328619|gb|BJ160624.1|BJ160624
EST:     CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTA                         ACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTTGCCCCTT
genomic: CCCGCACTCCAAACATCGTCACGTGGATCTCAGTCCTGCTTGGAATATTAgtaagcaaag ... tgttgtgcagACGGAGAATCTCGTTACTAAGATTGCGACTCTGCGAGAAGACTTGCCCCTT