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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATGGCCCGTTGGTTACAGTCCGCTGGGCTCCAGCATTTGGCAGCTCCCTTGTCAGCGGCGGCCCTTGATCATCGACTACTTCCTTCTTTGCTTATGCAGgttctttccatattctcaatatgtcagtgactgctactcatctgcgatatgttctttgtttaaaacccagattttgcacgatgttgtggtgtaagttctg...

Basic information

species Physcomitrella patens
transcript PP1S79_31V6.1
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S79_31V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ24862 (Selaginella moellendorffii), 5'ss of exon 1
GATGGCCCGTTGGTTACAGTCCGCTGGGCTCCAGCATTTGGCAGCTCCCTTGTCAGCGGCGGCCCTTGATCATCGACTACTTCCTTCTTTGCTTATGCAGgttctttccatattctcaatatgtcagtgactgctactcatctgcgatatgttctttgtttaaaacccagattttgcacgatgttgtggtgtaagttctg-----
 ||||| || ||| ||||||| || |||||||||||| ||||||| ||  || | |||||||| || |||||||| || || || ||| |||| |||||||||  |    | || ||  | ||        |||   |     | |  |||          |||  | |||||||      |  || ||  | | |  ||     
-ATGGCGCGGTGGCTACAGTCGGCGGGGCTCCAGCATCTGGCAGCGCCGCTGGCGGCGGCGGCGCTAGATCATCGCCTCCTCCCATCTCTGCTCATGCAGgtttgtggtctcttttctttgtgc----atttgcattttcgtggtggaatggataggcagaaaagtcgagatttt-tggagtcctggggcttgaatgttgctggg

upper sequence: PP1S79_31V6.1 (Physcomitrella patens), 5'ss of exon 1
lower sequence: EFJ30271 (Selaginella moellendorffii), 5'ss of exon 1
GATGGCCCGTTGGTTACAGTCCGCTGGGCTCCAGCATTTGGCAGCTCCCTTGTCAGCGGCGGCCCTTGATCATCGACTACTTCCTTCTTTGCTTATGCAGgttctttccatattctcaatatgtcagtgactgctactcatctgcgatatgttctttgtttaaaacccagattttgcacgatgttgtggtgtaagttctg-----
 ||||| || ||| ||||||| || |||||||||||| ||||||| ||  || | |||||||| || |||||||| || || || ||| |||| |||||||||  |    | || ||  | ||        |||   |     | |  |||          |||  | |||||||      |  || ||  | | |  ||     
CATGGCGCGGTGGCTACAGTCGGCGGGGCTCCAGCATCTGGCAGCGCCGCTGGCGGCGGCGGCGCTAGATCATCGCCTCCTCCCATCTCTGCTCATGCAGgtttgtggtctcttttctttgtgc----atttgcattttcgtggtggaatggataggcagaaaagtcgagatttt-tggagtcctggggcttgaatgttgctggg