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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CCTTTTTCTGCGTCGCACTGTAATATTGTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgttgccgcatctaaggaatagcggtagtcgtttttgcattcttagttttgaggtgcttttgtgccactccagggttttggttttgaagtcact...

Basic information

species Physcomitrella patens
transcript PP1S79_253V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|67573153|gb|BJ945977.1|BJ945977
EST:     ATATTGTTTGAGTCGCCTCGTCTGCGTCTTAG                         CAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: ATATTGTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
EST: gi|67691427|gb|BJ951660.1|BJ951660
EST:     TTTCTGCGTCGCACTGTAATATTGTTTGAGTCGCCTCGTCTGCGTCTT--                         -AGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: TTTCTGCGTCGCACTGTAATATTGTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
EST: gi|67696537|gb|BJ956770.1|BJ956770
EST:     TTTCTGCGTCGCACTGTAATATTGTTTGAGTCGCCTCGTCTGCGTCTTAG                         CAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: TTTCTGCGTCGCACTGTAATATTGTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
EST: gi|67508207|gb|BJ941078.1|BJ941078
EST:     ATATTGGTTTGAGTCGCCTCGTCTGCGTCTT--                         -AGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: ATATT-GTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
EST: gi|67693178|gb|BJ953411.1|BJ953411
EST:     GAGTCGCNTCGTCTGCGTCTT--                         -AGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: GAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
EST: gi|7584238|gb|AW700135.1|AW700135
EST:     ATTGTTTGAGTCGCCTCGTCTGCGTCTT--                         -AGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: ATTGTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
EST: gi|162268442|gb|FC444315.1|FC444315
EST:     ATATTGTTTGAGTCGCCTCGTCTGCGTCTT--                         -AGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA
genomic: ATATTGTTTGAGTCGCCTCGTCTGCGTCTTAGgtgcgttgtt ... ggttttgtagCAGGTAAGATGGCGAAGTCCAAGAACCACACTGCGCACAACCAGTCCTACA