1 5' 3' | 2 5' 3' | 3 5' 3' |
CAACTGGCATGCGTATGAGGAATTTCTTAGTGCTAATCCAGTTCTGGCGAAGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcgatgtttcctctggagtattctaatgaatagactcttgacagggattgaatgcatttctactatatggctaggccgtggtctgttttcacacagtacacatattgtggcataaatctaacataggttctgaatcatgcag
species | Physcomitrella patens |
transcript | PP1S79_119V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|162183031|gb|FC360597.1|FC360597
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|100414859|gb|BY956898.1|BY956898
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|162192850|gb|FC369662.1|FC369662
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATNGGAGATTGGATGGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|162246113|gb|FC421924.1|FC421924
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|162192851|gb|FC369663.1|FC369663
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|162273186|gb|FC449206.1|FC449206
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGAEST: gi|162196349|gb|FC373027.1|FC373027
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
EST: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAG TGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
genomic: AGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcga ... aatcatgcagTGTGTAGAGGGAAAACCGGTTCTCGAGTTCAGCAGAGTCAGGCTTCTGAGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CAACTGGCATGCGTATGAGGAATTTCTTAGTGCTAATCCAGTTCTGGCGAAGATGATGATCAGTGGAGTTGTGTACTCGATTGGAGATTGGATTGGGCAGgtaatatcgatgtttcctctggagtattctaatgaatagactcttgacagggattgaatgcatttctactatatggctaggccgtggtctgttttcacacagtacacatattgtggcataaatctaacataggttctgaatcatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAT