1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
AGTTTTCCCTCTTCCTGACCTGATTGGACCCGATTGGATCCTTGAGGCTTGCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctggaactttgagttgtacactggagcaatttgtttgactcttgctgcatttgtgccattaggccggcgctgaggccgggtggtttggcctagttgttgtag
species | Physcomitrella patens |
transcript | PP1S795_4V6.2 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCT GAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGAEST: gi|67574773|gb|BJ947597.1|BJ947597
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctgg ... gttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
EST: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCT GAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGAEST: gi|208387277|gb|DC933028.1|DC933028
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctgg ... gttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
EST: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTTTGTTGTEST: gi|208387277|gb|DC933028.1|DC933028
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACC-------Tgtgagtctgg ... gttg
EST: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTTTGTTGTEST: gi|208387277|gb|DC933028.1|DC933028
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACC-------Tgtgagtctgg ... gttg
EST: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTTTGTTGTEST: gi|67702801|gb|BJ963034.1|BJ963034
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACC-------Tgtgagtctgg ... gttg
EST: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCT GAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
genomic: GCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctgg ... gttgttgtagGAACCGGGAGTTGTGTGACTTAGGGCAAGGGATTGGTCGAGCAGTGATTGA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGTTTTCCCTCTTCCTGACCTGATTGGACCCGATTGGATCCTTGAGGCTTGCGACTCTGTTGACAAGCAGAGAGAGGGATTTCGATTTGGATCATGACCTgtgagtctggaactttgagttgtacactggagcaatttgtttgactcttgctgcatttgtgccattaggccggcgctgaggccgggtggtttggcctagttgttgtag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGAGG