1 5' 3' | 2 5' 3' | 3 5' 3' |
AGGCCTTTGCGCCAAGGTCGTCGTGGTCGATGCTCGCCACCACATGCTCGGCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctcggtcacgcttatttccccgatttttcaactacctgtgtaaacttgaattcgttcgcctgtgggattcgcggattttcatatcctcgcttttgttcaaaccag
species | Physcomitrella patens |
transcript | PP1S75_223V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|37840797|gb|BJ598805.1|BJ598805
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67578235|gb|BJ950402.1|BJ950402
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67572139|gb|BJ944963.1|BJ944963
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67576598|gb|BJ949422.1|BJ949422
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67691747|gb|BJ951980.1|BJ951980
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: TCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162249129|gb|FC420380.1|FC420380
genomic: TCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162184188|gb|FC359649.1|FC359649
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67694629|gb|BJ954862.1|BJ954862
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|37821428|gb|BJ579494.1|BJ579494
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162184189|gb|FC359650.1|FC359650
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67700129|gb|BJ960362.1|BJ960362
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67704631|gb|BJ964864.1|BJ964864
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|100355108|gb|BY965008.1|BY965008
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162262069|gb|FC436850.1|FC436850
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162267118|gb|FC443349.1|FC443349
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67571310|gb|BJ944134.1|BJ944134
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|18363651|gb|BJ195723.1|BJ195723
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67716345|gb|BJ966605.1|BJ966605
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162249130|gb|FC420381.1|FC420381
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162246156|gb|FC423592.1|FC423592
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67694095|gb|BJ954328.1|BJ954328
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67507712|gb|BJ940592.1|BJ940592
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67701102|gb|BJ961335.1|BJ961335
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67695506|gb|BJ955739.1|BJ955739
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|37834782|gb|BJ592794.1|BJ592794
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: TCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|7286629|gb|AW599116.1|AW599116
genomic: TCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGAGAGATA-GCTTGTCATGTGGCCTTGTGAGGCAEST: gi|18342311|gb|BJ174346.1|BJ174346
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAG-GAGATCTGCTTGTCAGGTGGCCTTGTGAGGCA
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67570797|gb|BJ943621.1|BJ943621
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67724859|gb|BJ975118.1|BJ975118
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162246155|gb|FC423591.1|FC423591
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162277320|gb|FC453126.1|FC453126
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162221684|gb|FC397909.1|FC397909
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162277321|gb|FC453127.1|FC453127
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|162221683|gb|FC397908.1|FC397908
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAGEST: gi|67508528|gb|BJ941392.1|BJ941392
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
EST: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTG GTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
genomic: GCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctc ... ttcaaaccagGTTGTTGTACGTTGCGAGGAGATCTGCTTGTCAGGTGGCCTTGTGAGGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| AGGCCTTTGCGCCAAGGTCGTCGTGGTCGATGCTCGCCACCACATGCTCGGCCGCTTAGCCTCCATCCTCGCGAAAGAGCTCCTCAATGGCCAGAAAGTGgtacgtcctcggtcacgcttatttccccgatttttcaactacctgtgtaaacttgaattcgttcgcctgtgggattcgcggattttcatatcctcgcttttgttcaaaccag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTCCTC