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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GATATCTCCGGCCCGGAGCTTGTGGCCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGGTCTCATGCTTCCGTCTCATACTGGgtgtgtaagtaccaatagtttatgtgcattttgtatttagttccatgtgtgtagatattttgcctgattgttttcgattctggtggctcaagtttcgattatcgttggaaatgaaggattgataattctcggttgcttgcag

Basic information

species Physcomitrella patens
transcript PP1S226_16V6.3
intron # 1
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: PP1S226_16V6.3 (Physcomitrella patens), 5'ss of exon 1
lower sequence: AT5G64250.2 (Arabidopsis thaliana), 5'ss of exon 1
-------------------------GATATCTCCGGCCCGGAGCTTGTGGCCGCCGTTGCCAATGCAGGAGGTCTCGGCATTCTCCGCGCTCCATCTCAGGTCTCATGCTTCCGTCTCATACTGGgtgtgtaagtaccaatagtttatgtgcattttgtatttagttccatgtgtgtagatattttgcctgattgttttcgattctggtggctcaagtttcgattatcgttggaaatgaaggattgataattctcggttgcttgcag
                         ||||||||||| || |||||||| |||||||| || |||||||||||  | ||  ||||| |   |||   |  |||    |||  |  | || |  |   ||  |   |    |||| |    || ||| |||   |   |  ||  |                                                                                             
GATAGTTCAGGCGCCATTAGGACCAGATATCTCCGGACCAGAGCTTGTAGCCGCCGTCGCTAATGCAGGAGGGATTGGTCTTCTCAGATGTCCTGATTGGgtaaattgcaactttttcgttttctttg-atttttgtttatagatatattgaattatgtgaatcaatgaatcag---------------------------------------------------------------------------------------------