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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

CTTCCCCCGTGTTGCCCCTTTTGCTTGACTTGCTCATCGCTGAGCACTAACCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttagggttgtggaccttgctctgtgcagctctgtctttctgctttaagaatacactaggcttcttggtttcttaatgtttaagatatttagggtttcgctggaatttagtagtctgtcggtatctccaatcgatagttactgatgctttgggtgtgggctatgtttgtgtgatgaag

Basic information

species Physcomitrella patens
transcript PP1S169_19V6.1
intron # 1
splice site 5'
intron type U2

Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|162228482|gb|FC404431.1|FC404431
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67723878|gb|BJ974137.1|BJ974137
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|208387340|gb|DC933091.1|DC933091
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162239540|gb|FC417979.1|FC417979
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67571052|gb|BJ943876.1|BJ943876
EST:     CCGCTTTCGCGTCGTTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCGCTTTCGCGTCG-TTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162268529|gb|FC444402.1|FC444402
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162241701|gb|FC417228.1|FC417228
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67716842|gb|BJ967101.1|BJ967101
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18374914|gb|BJ206492.1|BJ206492
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18341200|gb|BJ173233.1|BJ173233
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162242312|gb|FC416094.1|FC416094
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|37822905|gb|BJ580971.1|BJ580971
EST:     GCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: GCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|208377368|gb|DC906637.1|DC906637
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|208364047|gb|DC947235.1|DC947235
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|37833508|gb|BJ591520.1|BJ591520
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162243575|gb|FC419512.1|FC419512
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162268530|gb|FC444403.1|FC444403
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67725360|gb|BJ975619.1|BJ975619
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18356574|gb|BJ188633.1|BJ188633
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18359686|gb|BJ191747.1|BJ191747
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18343709|gb|BJ175747.1|BJ175747
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67709802|gb|BJ965618.1|BJ965618
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18349005|gb|BJ181054.1|BJ181054
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67709312|gb|BJ965128.1|BJ965128
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67578123|gb|BJ950290.1|BJ950290
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|67694360|gb|BJ954593.1|BJ954593
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|19781336|gb|BQ039687.1|BQ039687
EST:     TTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: TTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162277116|gb|FC453338.1|FC453338
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|208395101|gb|DC920514.1|DC920514
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162220442|gb|FC395979.1|FC395979
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|37835973|gb|BJ593985.1|BJ593985
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|18342387|gb|BJ174422.1|BJ174422
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162261378|gb|FC437811.1|FC437811
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162204729|gb|FC381125.1|FC381125
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162271874|gb|FC448084.1|FC448084
EST:     CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: CCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
EST: gi|162243574|gb|FC419511.1|FC419511
EST:     TTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATG                         ACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG
genomic: TTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTG

RNA-Seq data


 ATGC   Supported by RNA-Seq exonic block that spans over the splice site

 atgs   Truncated intron sequence

Each block is as long as the maximal overhang of any read spanning the junction.
The score is the number of alignments spanning the junction.


Found data for 1 RNA-Seqlibrary.


Block sizes: 34 (upstream exon), 33 (downstream exon)
Score: 22

CTTCCCCCGTGTTGCCCCTTTTGCTTGACTTGCTCATCGCTGAGCACTAACCCGCTTTCGCGTCGTTGCCTCGCCAGCGTCTGCCGAGTATCGCAATATGgtacgcttag ... tgtgatgaagACTGTCAAGAGGCGCAGCGGAGGTCGCAACAAGCATGGCCGTGGCCATGTGAACCCTATTCGGTGCTCTAACTGTGGGCGCTGTGTCCCCAAG




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