1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
CGTGATACTTCAGTCGCAGAGAACGGTGTATTTTCTCACGTTTTAGGAGTTGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTCgtacgtggacgtgatctctctctcattttggttcttgtgtttatgtggttgttgggcttgatcctcttggagggaaggatgtaatttctcaagctctttt...
species | Physcomitrella patens |
transcript | PP1S101_227V6.1 |
intron # | 1 |
splice site | 5' |
intron type | U2 |
EST: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTC GTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCAEST: gi|208370405|gb|DC936411.1|DC936411
genomic: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTCgtacgtggac ... gctggtctagGTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCA
EST: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTC GTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCAEST: gi|67704607|gb|BJ964840.1|BJ964840
genomic: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTCgtacgtggac ... gctggtctagGTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCA
EST: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTC GTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCAEST: gi|67573448|gb|BJ946272.1|BJ946272
genomic: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTCgtacgtggac ... gctggtctagGTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCA
EST: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTC GTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCA
genomic: TGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTCgtacgtggac ... gctggtctagGTGGTGATGATGGCGGAGGTCAAGTTGTTGCAACTCCAGGACCATCAGCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGTGATACTTCAGTCGCAGAGAACGGTGTATTTTCTCACGTTTTAGGAGTTGGTGTTCGAGGTCTCGCTGCTAAGGCCAAGAAATCGGGTGGAAAATCTCgtacgtggacgtgatctctctctcattttggttcttgtgtttatgtggttgttgggcttgatcctcttggagggaaggatgtaatttctcaagctctttt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA