1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
TGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGGGTATAGCTAACTTCACCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgctgacccctaaatctagaattgtggccaatgttctctaaaacttatcaccagttccacatgttcatctgattgattgactgtcaactgaatctgaaacttgctttcag
species | Oryza sativa |
transcript | LOC_Os11g47330.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89167861|gb|CI021560.1|CI021560
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86434803|gb|CI106036.1|CI106036
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86536928|gb|CI177134.1|CI177134
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88993356|gb|CI257784.1|CI257784
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89173357|gb|CI041250.1|CI041250
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAAGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88304259|gb|CI515532.1|CI515532
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: TTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|29623682|gb|CB628693.1|CB628693
genomic: TTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|15854608|gb|BI807420.1|BI807420
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: TAAGAGAGAAG GAATCCACA-TTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGEST: gi|88220355|gb|CI219915.1|CI219915
genomic: TAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCA-AGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGG
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89194489|gb|CI116926.1|CI116926
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCCAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89195503|gb|CI051616.1|CI051616
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86871193|gb|CI328395.1|CI328395
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86418647|gb|CI053448.1|CI053448
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89169878|gb|CI110237.1|CI110237
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGCCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|14981637|gb|BI306315.1|BI306315
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: GGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89185634|gb|CI047503.1|CI047503
genomic: GGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88843098|gb|CI371998.1|CI371998
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTC-GGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACTTGTTGGTEST: gi|86528348|gb|CI168554.1|CI168554
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGTCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|8856181|gb|AU093499.1|AU093499
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|89193655|gb|CI116288.1|CI116288
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCCAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|29687148|gb|CB683423.1|CB683423
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|33671920|gb|CF300159.1|CF300159
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88840778|gb|CI080232.1|CI080232
genomic: CATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88976891|gb|CI257587.1|CI257587
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88993379|gb|CI257807.1|CI257807
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86893933|gb|CI314922.1|CI314922
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGCCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86868810|gb|CI334182.1|CI334182
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: ATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88988022|gb|CI018065.1|CI018065
genomic: ATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|29667083|gb|CB663358.1|CB663358
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86837511|gb|CI345722.1|CI345722
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|86488927|gb|CI131560.1|CI131560
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88481337|gb|CI418608.1|CI418608
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88960097|gb|CI381975.1|CI381975
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88994381|gb|CI117335.1|CI117335
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|27920666|gb|CB096474.1|CB096474
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGTEST: gi|88995393|gb|CI036968.1|CI036968
genomic: CCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTGAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGGT
EST: TTTAGCGGCATCATTCGGGCCTTAAGAGAGAAG GAATCCAAGTTGAAAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGG
genomic: TTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgc ... ttgctttcagGAATCCAAGTTG-AAGGCTGCAAGGATGCACATCTATGTCCGACGTGGTGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGGGTATAGCTAACTTCACCGACGTCGGGGCCACATTTAGCGGCATCATTCGGGCCTTAAGAGAGAAGgtagctatgctgacccctaaatctagaattgtggccaatgttctctaaaacttatcaccagttccacatgttcatctgattgattgactgtcaactgaatctgaaacttgctttcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAGA