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GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGgtaagaaccttattcagaagataccgtttagtactctagttttcatcatgaggaaaaccataagtggtggaaataaaacaacaaaaatattaagcgattg...
species | Oryza sativa |
transcript | LOC_Os07g48200.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAGATCAA-TTTT-CCTATCCGTTCTACTGG GGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTTEST: gi|38469181|gb|CF953312.1|CF953312
genomic: GAGATCAATTTTTACC-ATCCGTTCTACTGGgtaagaacct ... tattttttagGGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTT
EST: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG GGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTTEST: gi|58689987|gb|CK078674.1|CK078674
genomic: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGgtaagaacct ... tattttttagGGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTT
EST: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG GGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAAGGGCGCCGGTTEST: gi|51946086|gb|CV152427.1|CV152427
genomic: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGgtaagaacct ... tattttttagGGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTT
EST: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG GGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTTEST: gi|58686025|gb|CK074712.1|CK074712
genomic: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGgtaagaacct ... tattttttagGGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTT
EST: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGG GGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTT
genomic: GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGgtaagaacct ... tattttttagGGAACAAGATCAATGGATTCAATGTGATGATTGCTCAAAATGGCGCCGGTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAACCCCCTGTGTTTGCAAAGAGATCAATTTTTACCATCCGTTCTACTGGgtaagaaccttattcagaagataccgtttagtactctagttttcatcatgaggaaaaccataagtggtggaaataaaacaacaaaaatattaagcgattg
- - - - - - - GCAAAG
- - - - - - - - - AAGAGA
- - - - - - - - - - GAGATC
- - - - - - - - - - AGATCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaataaa
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaata