1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
ATGGGTTTAATGGTTAACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactttcccttctcatcattttaatccatgtctgcattttcaaggaaaagaagacctacacgggtattcagttattcagtatttatttcctctggtagtaatttcgagtgttctatgtataatgtgcctcctgatgatgttgcag
species | Oryza sativa |
transcript | LOC_Os07g01760.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|33381539|gb|CF196882.1|CF196882
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGANNAGGAGAGCACGCCTGATGACAGATGGEST: gi|29645692|gb|CB650699.1|CB650699
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|29615822|gb|CB620834.1|CB620834
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|33801487|gb|CF326616.1|CF326616
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|33381971|gb|CF197314.1|CF197314
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|33675257|gb|CF303496.1|CF303496
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|5667553|gb|AU077813.1|AU077813
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTTCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACCGCCTGATGACAGATGEST: gi|313079823|gb|HO213262.1|HO213262
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCAC-GCCTGATGACAGATG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|701822|gb|D48113.1|D48113
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGGGNTATCCCTTATCTGAGGTTT-CTGCTGAA-G AAAGTCTATCCEST: gi|33381462|gb|CF196805.1|CF196805
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCC
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|11442608|gb|BF430511.1|BF430511
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGGEST: gi|38479882|gb|CF963971.1|CF963971
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
EST: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAG CAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
genomic: AACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactt ... gatgttgcagCAAGTCTATCCTCGAGTCTTTGAGGAGGAGAGCACGCCTGATGACAGATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATGGGTTTAATGGTTAACCCTCCTAAGCCTGGAGATATCTCTTATCTGAAGTTTTCTGCTGAAAGgtatatactttcccttctcatcattttaatccatgtctgcattttcaaggaaaagaagacctacacgggtattcagttattcagtatttatttcctctggtagtaatttcgagtgttctatgtataatgtgcctcctgatgatgttgcag
- - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - GGAGAT
- - - - - - - - - - - - - - - - - - - - - - CTGAAG