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GAGATTGCCATCGTCAAAAACCCGGCTAACAGATGCACAGAAACGTGCACAAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGCAGgtattattgcgttattttctgctttacctattaaatgtttcatttttcttcctgttgctcctcatgttttccatccttttggacctcataaaatatttct...
species | Oryza sativa |
transcript | LOC_Os03g64320.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GCAGACCTTCAAAAGGCAAAGAAAGAGCAG GAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAGEST: gi|58668367|gb|CK057053.1|CK057053
genomic: GCAGACCTTCAAAAGGCAAAGAAAGAGCAGgtattattgc ... acattttcagGAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAG
EST: AAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGCAG GAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAGEST: gi|58612438|gb|CK040150.1|CK040150
genomic: AAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGCAGgtattattgc ... acattttcagGAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAG
EST: AAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGCAG GAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAG
genomic: AAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGCAGgtattattgc ... acattttcagGAAGAGGAACAGATTAAACGGCTGGAAAGGCTTAAGCAAGAGAGGCAGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAGATTGCCATCGTCAAAAACCCGGCTAACAGATGCACAGAAACGTGCACAAAACCTGCGGGCATATAAAGCAGACCTTCAAAAGGCAAAGAAAGAGCAGgtattattgcgttattttctgctttacctattaaatgtttcatttttcttcctgttgctcctcatgttttccatccttttggacctcataaaatatttct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGAGCA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGCAG