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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GGAAACAGTTTTATCTACTCGCAATCGGATTGAATCTCGTAATCCACTAGCTTTTGCTCCAAAAGTAATTCGCACTTGTGGGCCTGGTCTGGAGTTTGGGgtaagagcacattccttttgcttttcttttctgtcattattgctcataacgttctttttcatggcatag

Basic information

species Oryza sativa
transcript LOC_Os03g43730.1
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g43730.1 (Oryza sativa), 5'ss of exon 9
lower sequence: AT4G14770.1 (Arabidopsis thaliana), 5'ss of exon 5
GGAAACAGTTTTATCTACTCGCAATCGGATTGAATCTCGTAATCCACTAGCTTTTGCTCCAAAAGTAATTCGCACTTGTGGGCCTGGTCTGGAGTTTGGGgtaagagcacattccttttgcttttcttttctgtcattattgctc-ataacgttct---ttttcatggcatag-------------
 ||    ||  |  | |||||||| | |||||||||||| |||||||| || |||||||| ||||| ||| | |  | ||   | | ||  ||    |||||| ||     ||||   | ||||  ||      ||| ||   || ||   | |     || | ||   || |             
AGACGTTGTCCTGGCGACTCGCAAACAGATTGAATCTCGGAATCCACTTGCATTTGCTCCTAAAGTCATTAGGAACTCTGACTCAGTTCAAGAAACCGGGgtaggattcttttccccgtcctttgattcctctgcatcatccatctatcttgcttgaagttataataatattgtaatgacacacag

upper sequence: LOC_Os03g43730.1 (Oryza sativa), 5'ss of exon 9
lower sequence: Vv05s0020g03880.t01 (Vitis vinifera), 5'ss of exon 7
GGAAACAGTTTTATCTACTCGCAATCGGATTGAATCTCGTAATCCACTAGCTTTTGCTCCAAAAGTAATTCGCACTTGTGGGCCTGGTCTGGAGTTTGGGgtaagagcacattccttttgcttttcttttctg-----tcattattgctcataacgttctttttcatggcatag--------
 || || ||| |  | |||||||| | ||| |||||||| ||||||||||| |||||||| ||||| ||| | |  | ||   ||   | |||  ||||||| ||  || | | |||    | |  || |        ||   | ||||  | ||  | ||      ||  |          
AGATACTGTTCTTGCAACTCGCAAGCAGATCGAATCTCGGAATCCACTAGCATTTGCTCCCAAAGTGATTAGGAGCTCTGATTCTTTGCCGGAAGTTGGGgttaggacataattcttgccttgtgtttatacagaaaatctgaactgctagttaccctgttaagtgaggttttctcttgcag