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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

TTTCAGTATTTGATTCAGTTGTACAAGGAGGGGATGCTGTGTGGGAAGGATTACGTATATACGATGGGAAAGTGTTCAAACTTGATGAACACTTGGATAGgtgcaataactatttctgtatttccattcttttttctgcttgtgatatatgagaagattgtccttatgtttttatctag

Basic information

species Oryza sativa
transcript LOC_Os03g24460.3
intron # 9
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os03g24460.2 (Oryza sativa), 5'ss of exon 9
lower sequence: GRMZM2G108416_T01 (Zea mays), 5'ss of exon 9
TTTCAGTATTTGATTCAGTTGTACAAGGAGGGGATGCTGTGTGGGAAGGATTACGTATATACGATGGGAAAGTGTTCAAACTTGATGAACACTTGGATAGgtgcaataactatttctgtatttccattctttt------------ttctgcttgtgatatatgagaa----gattgtccttatgtttttatctag
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TTTCAGTGTTTGATTCAGTTGTACAAGGAGGAGATGCTGTTTGGGAAGGTTTACGTATATATGATGGAAAAGTATTCAAATTAGATGAACATTTGGACAGgtgcagtagctagttgcatacttgcatcttcttctgcatcccattttctgcttatggtttatctaactggtgatgttcccttttttcttgtctag