1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
CATGTGGTTGGGAAACCTACTGCTAGAACGCAGCGATGACATATACCGGATGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgttaaacttagcccgtaattttacctagtccactcttgattcttccatcgtactaatctcttactgtggtatttacacaacgaaaccaattactctgtgttatctaagaaatgtctgtgttcgttgggcag
species | Oryza sativa |
transcript | LOC_Os02g55630.1 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GTGGAATGCCTCAGCGCTTTGTCTGTCAG GGAGTGCACGACATTTTGCAGGGATCTCCCGAGAAAATGTGGGAACCAAATEST: gi|86872960|gb|CI326957.1|CI326957
genomic: GTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
EST: AGTGGAATGCCTCAGCGCTTTGTCTTTCAG GGAGTGCACCACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAATEST: gi|86865251|gb|CI330819.1|CI330819
genomic: AGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
EST: TGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAG GGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAATEST: gi|86842188|gb|CI338516.1|CI338516
genomic: TGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
EST: TGAA-GGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAG GGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAATEST: gi|88249704|gb|CI249553.1|CI249553
genomic: TGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
EST: GCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAG GGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAATEST: gi|88989013|gb|CI040740.1|CI040740
genomic: GCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
EST: TGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAG GGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAATEST: gi|86871807|gb|CI331184.1|CI331184
genomic: TGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
EST: GGAATGCCTCAGCGCTTTGTCTTTCAG GGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGT-GGAACCAAAT
genomic: GGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgtta ... cgttgggcagGGAGTGCACGACATTTTCCAGGGATCTCCCGAGAGAATGTGGGAACCAAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CATGTGGTTGGGAAACCTACTGCTAGAACGCAGCGATGACATATACCGGATGAAGGGGCTACTTTCTGTCAGTGGAATGCCTCAGCGCTTTGTCTTTCAGgtttatgttaaacttagcccgtaattttacctagtccactcttgattcttccatcgtactaatctcttactgtggtatttacacaacgaaaccaattactctgtgttatctaagaaatgtctgtgttcgttgggcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGTGGA