1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattcttaggctgagttattatctccactttcccaactcacttccctcgttttccacgcgcacgcttttcaaactgctaaacggtatgtcttttgc...
species | Oryza sativa |
transcript | LOC_Os01g62040.2 |
intron # | 9 |
splice site | 5' |
intron type | U2 |
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|89193193|gb|CI050491.1|CI050491
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|86483323|gb|CI125956.1|CI125956
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|88829069|gb|CI073939.1|CI073939
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|88260703|gb|CI362996.1|CI362996
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: AGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTCCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|109712273|gb|CI104881.1|CI104881
genomic: AGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|86495810|gb|CI138443.1|CI138443
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|29613696|gb|CB618709.1|CB618709
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGGEST: gi|88266771|gb|CI377673.1|CI377673
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
EST: GAAGAAAGTC-TGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAG GCATGCTATTCAGCTGCTATCACCTCCCAGCGTAGTTGCAAAGGCTAATGG
genomic: GAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattct ... tctcttgcagGCATGCTATTCAGCTGCTATCACCTGCCAGCGTAGTTGCAAAGGCTAATGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTCTTGCTATTAGAGCACAGGTAGAAGAGATTGAGATCGATGAAGAAAGTCTTGCATTTTTAGGAGAGATCGGACAACAGACATCTTTGAGgtatgattcttaggctgagttattatctccactttcccaactcacttccctcgttttccacgcgcacgcttttcaaactgctaaacggtatgtcttttgc
- - - - - - - - - - - - - - - - - - - - - AAGAAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATC