1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
GGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatccttttttctcaaaccatcttgtaatttctttgttcacgagtgctcctaaatactactccgtaattgccagttttgctattaggtaaactcccttg...
species | Oryza sativa |
transcript | LOC_Os01g48270.1 |
intron # | 9 |
splice site | 5' |
intron type | U12 (go to U12 genes for details) |
EST: ATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGT ATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGEST: gi|4714792|gb|AU055909.1|AU055909
genomic: ATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatcctttt ... ttgcaattagATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAG
EST: CCGTTTGGAGAAACGT ATTC-TGGTCCCTTCCCAGAGCAAGAAGCTA-ACATGCCATGTTTGAAGAGEST: gi|11565056|gb|AU165692.1|AU165692
genomic: CCGTTTGGAGAAACGTgtatcctttt ... ttgcaattagATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAG
EST: GTTGCNCCGTTTGGAAGAAACGT ATTCNTGGTCCCNTTACCAGAGCAAGAAAGCTAGACATGCCATGTTTGAAEST: gi|117243388|gb|CT843439.1|CT843439
genomic: GTTGCGCCGTTTGG-AGAAACGTgtatcctttt ... ttgcaattagATTCTTGTTCCC-TTACCAGAGCAAG-AAGCTAGACATGCCATGTTTGAA
EST: ATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGT ATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGEST: gi|86498107|gb|CI140740.1|CI140740
genomic: ATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatcctttt ... ttgcaattagATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAG
EST: ATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGT ATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAGEST: gi|2428954|gb|C73417.1|C73417
genomic: ATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatcctttt ... ttgcaattagATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAG
EST: ATGCAGCAATGTTGCGCCGTTTGGAGAAACGT ATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAG
genomic: ATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatcctttt ... ttgcaattagATTCTTGTTCCCTTACCAGAGCAAGAAGCTAGACATGCCATGTTTGAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGATGGGTTAACTAAGACAGATGATCTCGTTTTTGTTCTAGCCGCCACAAATTTGCCATGGGAACTGGATGCAGCAATGTTGCGCCGTTTGGAGAAACGTgtatccttttttctcaaaccatcttgtaatttctttgttcacgagtgctcctaaatactactccgtaattgccagttttgctattaggtaaactcccttg
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA