1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
CCGAAGGATTTATGAAGAATTTTTAGCAGTTCCAGTTTCTAAAGGGAGGAAAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAGgtattaatatgaaatgtttgcttcattccacccgattagtttttctgtagttaccctgatgaagaagagtacttatctttatatttagtaataataaaattttatcatatttgcag
species | Oryza sativa |
transcript | LOC_Os12g25710.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAG GCCTTCATTCCAAAC-CAGGACGTGGTGTACAAGGGGCAACATCAEST: gi|33811197|gb|CF331488.1|CF331488
genomic: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAGgtattaatat ... atatttgcagGCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCA
EST: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAG GCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCACATTGTEST: gi|218482159|gb|FG950601.1|FG950601
genomic: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAGgtattaatat ... atatttgcagGCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCACATTGT
EST: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAG GCCTTCATTCCAAACACAGGAAGTGGTGTACAATGGGCAACATCACATTGTEST: gi|86901842|gb|CI298489.1|CI298489
genomic: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAGgtattaatat ... atatttgcagGCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCACATTGT
EST: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAG GCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCACATTGT
genomic: AAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAGgtattaatat ... atatttgcagGCCTTCATTCCAAACACAGGACGTGGTGTACAAGGGGCAACATCACATTGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCGAAGGATTTATGAAGAATTTTTAGCAGTTCCAGTTTCTAAAGGGAGGAAAAGTGAGATGGAAAAATTTGCTGGTGGACTGTATACAACAAGTGTTGAGgtattaatatgaaatgtttgcttcattccacccgattagtttttctgtagttaccctgatgaagaagagtacttatctttatatttagtaataataaaattttatcatatttgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - GATGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGTGGA