1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' |
CGGAGATTTGGGATATGCTTCAGAATTAGGAAACTATGCAGAGTATAGCGGTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactcaagatataaccataaccacatttctctccactcccttgttatgtcaatttgttaatgataacattcaatgcag
species | Oryza sativa |
transcript | LOC_Os11g47330.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTAAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|89167861|gb|CI021560.1|CI021560
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|86434803|gb|CI106036.1|CI106036
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: AGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|88993356|gb|CI257784.1|CI257784
genomic: AGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGTTTCTGCAGTATGCTAGAGTAGTACTTAAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|89173357|gb|CI041250.1|CI041250
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: AGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|29623682|gb|CB628693.1|CB628693
genomic: AGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|89195503|gb|CI051616.1|CI051616
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: CCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|86418647|gb|CI053448.1|CI053448
genomic: CCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: CAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|89185634|gb|CI047503.1|CI047503
genomic: CAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: CTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|29687148|gb|CB683423.1|CB683423
genomic: CTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|88976891|gb|CI257587.1|CI257587
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|88993379|gb|CI257807.1|CI257807
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTAAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|88988022|gb|CI018065.1|CI018065
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAACGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|29667083|gb|CB663358.1|CB663358
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|88994381|gb|CI117335.1|CI117335
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GAGGAGGTTCTCCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGTCCGCAAGAGAGCTCTTCTCATTGGAGGGEST: gi|27920666|gb|CB096474.1|CB096474
genomic: GAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
EST: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGAT TGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
genomic: GTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactc ... ttcaatgcagTGTGCGACTGCTGATCCTGATGGCCGCAAGAGAGCTCTTCTCATTGGAGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CGGAGATTTGGGATATGCTTCAGAATTAGGAAACTATGCAGAGTATAGCGGTGCTCCCAATGAGGAGGAGGTTCTGCAGTATGCTAGAGTAGTACTTGATgtaagcactcaagatataaccataaccacatttctctccactcccttgttatgtcaatttgttaatgataacattcaatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GGAGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG