1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctaccactcaactagcagcacatttttttttctatttcttaaccgagttaactctagctataagcacccaaaactgctgatataattgatctatttcatttattttactgagtgatgtgataacatactagaagatgaatcttccaggcccaaatatatgatttaatattttgctcttatgttaccttgcag
species | Oryza sativa |
transcript | LOC_Os11g28300.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGGCAGTTGGAGCATCATTGGGEST: gi|88984631|gb|CI009408.1|CI009408
genomic: CAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTA-GCAGTTGGAGCATCATTGGG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|86889430|gb|CI317230.1|CI317230
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG C-TGCAACCCACAAGAATGCAATCGGAGTAGGCAGTTGGAGCATCATTGGGEST: gi|86256354|gb|CI012644.1|CI012644
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTA-GCAGTTGGAGCATCATT-GG
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|86853706|gb|CI330557.1|CI330557
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|15856884|gb|BI809696.1|BI809696
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: CAACTATGTGCG CTTGCAACCCACCAAGGAATCCAATCGGAGTACCAGTTGGAGCATCATT-EST: gi|58693472|gb|CK082159.1|CK082159
genomic: CAACTAT-TGCGgtagtgctac ... taccttgcagCTTGCAACCCA-CAA-GAATGCAATCGGAGTAGCAGTTGGAGCATCATTG
EST: GCTGAATGGGGCGA-CGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|88993472|gb|CI110293.1|CI110293
genomic: GCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: GAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|86602153|gb|CI260623.1|CI260623
genomic: GAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|86535053|gb|CI175259.1|CI175259
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: GGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|88977113|gb|CI024850.1|CI024850
genomic: GGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|87029202|gb|CI276470.1|CI276470
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|8858437|gb|AU095755.1|AU095755
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|8528200|gb|AU093015.1|AU093015
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGCEST: gi|86545906|gb|CI186112.1|CI186112
genomic: TAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
EST: CTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCG CTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
genomic: CTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctac ... taccttgcagCTTGCAACCCACAAGAATGCAATCGGAGTAGCAGTTGGAGCATCATTGGGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTTATCTTAACCTTCTTAGCTGAATGGGGCGACCGAAGCCAAATAGCAACTATTGCGgtagtgctaccactcaactagcagcacatttttttttctatttcttaaccgagttaactctagctataagcacccaaaactgctgatataattgatctatttcatttattttactgagtgatgtgataacatactagaagatgaatcttccaggcccaaatatatgatttaatattttgctcttatgttaccttgcag
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