1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTTGGCTGCACCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGGgtaagcaagtgttatgaatttttcatggtatagtgcccaacttccattggaaccatgctaagctttttgtaactgattcacag
species | Oryza sativa |
transcript | LOC_Os11g10100.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCATTATTGAGATGGGAACCGCAAGACCTTCTTGGATTCAGTATGAAGGG GTGGCTGCAATATTTAAAATTGGCAACAGEST: gi|29680776|gb|CB677051.1|CB677051
genomic: CCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGGgtaagcaagt ... tgattcacagGTGGCTGCAATATTTAAAATTGGCAACAG
EST: CCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGG GTGGCTGCAATATTTAAAATTGGCAACAGCAAAGACATACCCGATATTCCAEST: gi|58594079|gb|CF992387.1|CF992387
genomic: CCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGGgtaagcaagt ... tgattcacagGTGGCTGCAATATTTAAAATTGGCAACAGCAAAGACATACCCGATATTCCA
EST: CCATGATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGG GTGGCTGCAATATTTAAAATTGGCAACAGCAAAGACATACCCGATATTCCA
genomic: CCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGGgtaagcaagt ... tgattcacagGTGGCTGCAATATTTAAAATTGGCAACAGCAAAGACATACCCGATATTCCA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GAATACCAATGGCTACAGTCTTTCGGTCGATATTTGGAGCCTTGGCTGCACCATTATTGAGATGGCAACCGCAAGACCTCCTTGGATTCAGTATGAAGGGgtaagcaagtgttatgaatttttcatggtatagtgcccaacttccattggaaccatgctaagctttttgtaactgattcacag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - GAGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAAGA