1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
ATCTGATCTAGCTGTTGGTGCTTACTAAATTGAGAACCCAATCATATTAACCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgttaatagtgcaacttcactatgttaattcatccttaacaaaatcagacaattgaagtattttttttcgtgctatgcag
species | Oryza sativa |
transcript | LOC_Os11g05394.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88508941|gb|CI436447.1|CI436447
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGANATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88998529|gb|CI389216.1|CI389216
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: TTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88507239|gb|CI434745.1|CI434745
genomic: TTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: TCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88833015|gb|CI369905.1|CI369905
genomic: TCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88519251|gb|CI446905.1|CI446905
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|27548902|gb|CA767570.2|CA767570
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|58585631|gb|CF983939.1|CF983939
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88472936|gb|CI410207.1|CI410207
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGCEST: gi|88375179|gb|CI523444.1|CI523444
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
EST: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAA GAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
genomic: CCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgtt ... tgctatgcagGAGTTATCAGAGCATATTGGTATTGGTCCAACTCTAAGAGATTGGATGAGC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATCTGATCTAGCTGTTGGTGCTTACTAAATTGAGAACCCAATCATATTAACCGAGATATTGGTTCCTACTTCCTACCTTCAGATCATGTGAGAGACCGAAgtatgttgttaatagtgcaacttcactatgttaattcatccttaacaaaatcagacaattgaagtattttttttcgtgctatgcag
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGATCA