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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GTCAGTCCCATCTCTCCAGCTATGGCACCCACTGGAGATGCTCAGTGTGCAGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTGgtaggtgctatgttctcagttacttgggtgacacttacaaaactaaatcttgtggactatgcaagaatgaaaaagtgcttttgcttggcag

Basic information

species Oryza sativa
transcript LOC_Os08g22864.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os08g22864.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G327394_T01 (Zea mays), 5'ss of exon 9
GTCAGTCCCATCTCTCCAGCTATGGCACCCACTGGAGATGCTCAGTGTGCAGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTGgtaggtgctatgttctcagttacttgggtgacacttacaaaactaaatcttgtggactatgcaagaatgaaaaagtgcttttgcttggcag
||||||||||| || ||  |||||||||||||||||||||||||| ||||||||| ||||||||||||  ||||||||||||| || ||||| || ||||||||||||||  || ||||||| || |||  ||  |||||| ||  ||||| | || |   |||  || ||||  |  |||| |||| |||
GTCAGTCCCATTTCGCCGACTATGGCACCCACTGGAGATGCTCAGCGTGCAGCTACTCAACTTCTTAGATCAATATTTGAATGTCTTGTAGAGATACTTGgtaggtgcta-attatcagttagtttggtttca--tacaaacctgtatcttattgatt-cacaaacattaaaattta-ttttacttgtcag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|29635903|gb|CB640912.1|CB640912
EST:     AGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTG                         AGAACCATATTACTGTTGGAGAGCTTCTTGAACAGAAATCATCAACTGAAG
genomic: AGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTGgtaggtgcta ... tgcttggcagAGAACCATATTACTGTTGGAGAGCTTCTTGAACAGAAATCATCAACTGAAG
EST: gi|58671768|gb|CK060454.1|CK060454
EST:     AGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTG                         AGAACCATATTACTGTTGGAGAGCTTCTTGAACAGAAATCATCAACTGAAG
genomic: AGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTGgtaggtgcta ... tgcttggcagAGAACCATATTACTGTTGGAGAGCTTCTTGAACAGAAATCATCAACTGAAG
EST: gi|33678899|gb|CF307138.1|CF307138
EST:     AGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTG                         AGAACCATATTACTGTTGGAGAGCTTCTTGAACAGAAATCATCAACTGAAG
genomic: AGCTAGTCAACTTCTTAGTGCAATATTTGAATGCCTGGTAGACATTCTTGgtaggtgcta ... tgcttggcagAGAACCATATTACTGTTGGAGAGCTTCTTGAACAGAAATCATCAACTGAAG