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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

GCATATGGTGTTGATAAGCAAAGACTTGTGGAGGAGATAACCCGTGCATATGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTGgtatttcaattttatgtgccttgaagagatcttctgtcacctcaatttttttattctccatctgtaattcttgcaaattcatttgtgctgacaatgcattatttttctgtag

Basic information

species Oryza sativa
transcript LOC_Os06g48770.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os06g48770.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G140917_T01 (Zea mays), 5'ss of exon 9
GCATATGGTGTTGATAAGCAAAGACTTGTGGAGGAGATAACCCGTGCATATGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTGgtatttcaattttatgtgccttgaagagatcttctgtcacctcaatttttttattctccatctgtaattcttgcaaattcatttgtgctgacaatgcattatttttctgtag--
|||||||||||||| ||||||| ||| || || ||||||||||||||||| ||||||||||||||| |||||||||||||||||||||| ||||| ||||||||||  | | |||     ||||  ||  ||||  ||||||        || ||||| |  ||      | ||| ||| |||  | ||     |||||| || |  | |    
GCATATGGTGTTGACAAGCAAAAACTGGTCGAAGAGATAACCCGTGCATACGCTCATCAAATATACATTGATGGCTTCTTTAACGGCGACCCTCATCCTGgtatttagaatatattcattttgagaagg-cttcgttcacct--------ttcttctctaattga-----tcgcacattaattcatacttgtg-tgcatttttctcttatgtag

upper sequence: LOC_Os06g48770.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GLYMA17G24420.1 (Glycine max), 5'ss of exon 7
GCATATGGTGTTGATAAGCAAAGACTTGTGGAGGAGATAACCCGTGCATATGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTGgtatttcaattttatgtgc-----cttg-------------aagagatcttctgtcacctcaatttttttatt----ct---------ccatctgtaattcttgcaaat-tcatttgtgctgacaatgcattatttttctgtag---------------
|| ||||| || ||||| ||||  ||||| |||||||| || ||||| ||||| ||||||||||| |||||||| || || ||||| |||||||| || |||| |       | |  |      ||||             ||  ||| || ||  |  |  | ||| || |     ||         | ||||||||  |||   | | |    |||||| || |   ||| |   ||| |                 
GCTTATGGAGTAGATAAACAAAAGCTTGTTGAGGAGATTACTCGTGCCTATGCCCATCAAATATATGTTGATGGATTTTTCAACGGTGATCCTCATCCAGgtactctctccctctacgtttgtgcttgtgtttgcatgtgcaaatgatattatggaattttcaatttgttgtagaaactatataagaacaatctgtaacacttctgattattccatgtgctcacgaactattttggctctcttaatggaatcatcacag
















Mapped EST sequences

Showing partial alignments of ESTs and genomic sequences. See full alignments


 ATGC     EST sequence
 ATGC     genomic sequence (exon)
 ATGC     genomic sequence (truncated intron)


EST: gi|86498768|gb|CI141401.1|CI141401
EST:     TGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTG                         GCAATTTTCTTGTTAGCAAGGAACCTCCACACAAGCCGATTCTCCTTGATT
genomic: TGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTGgtatttcaat ... ttttctgtagGCAATTTTCTTGTTAGCAAGGAACCTCCACACAAGCCGATTCTCCTTGATT
EST: gi|569556|gb|D40405.1|D40405
EST:     TGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTG                         GCAATTTTCTTGTTAGCAAGGAACCTCCACACAAGCCGATTCTCCTTGATT
genomic: TGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTGgtatttcaat ... ttttctgtagGCAATTTTCTTGTTAGCAAGGAACCTCCACACAAGCCGATTCTCCTTGATT
EST: gi|29621872|gb|CB626883.1|CB626883
EST:     TGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTG                         GCAATTTTCTTGTTAGCAAGGAACCTCCACACAAGCCGATTCTCCTTGATT
genomic: TGCTCATCAAATATACGTTGATGGCTTCTTTAACGGCGATCCTCACCCTGgtatttcaat ... ttttctgtagGCAATTTTCTTGTTAGCAAGGAACCTCCACACAAGCCGATTCTCCTTGATT