1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' |
TCAACTTTTTTTATGTCATTCCAATAGCATTCGTGCAATCTCTTGCAAGCCTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATgtaagtgtttcttcatgtgttgattatttatactattattgcatttccatgatttattcagcgtgtaattaatttgggtacattagacatatggttatcttctgctattcttttgaaatgccctgataaatcttgttgactattgtgcag
species | Oryza sativa |
transcript | LOC_Os05g51630.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAAT TGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAEST: gi|29678912|gb|CB675187.1|CB675187
genomic: CTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATgtaagtgttt ... tattgtgcagTGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAA
EST: CTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAAT TGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAAEST: gi|58693113|gb|CK081800.1|CK081800
genomic: CTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATgtaagtgttt ... tattgtgcagTGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAA
EST: C-TGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAAT TGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAA
genomic: CTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATgtaagtgttt ... tattgtgcagTGATGTCATCAAATCATTCATCCAAGGTTTTCTTCCAGGAATTGCTTTGAA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TCAACTTTTTTTATGTCATTCCAATAGCATTCGTGCAATCTCTTGCAAGCCTTGAAGGAATAGAAAAGGCGCTTCCATTTCTGAAACCCTTAATCAAAATgtaagtgtttcttcatgtgttgattatttatactattattgcatttccatgatttattcagcgtgtaattaatttgggtacattagacatatggttatcttctgctattcttttgaaatgccctgataaatcttgttgactattgtgcag
- - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - AAGGAA