1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' | 10 5' 3' | 11 5' 3' | 12 5' 3' |
GCTTTAGCTGCTCGTGGATTAAAAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAGgtaattaatgtacttttaaacctggatattcagctcatctttttttaaatatttaccaaatattctgaacttgtcgatgattatatcttgcag
species | Oryza sativa |
transcript | LOC_Os03g50850.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAG CATACACCCTTGGAACAATTGGATCGTAAGCATTTTGCCAAAGGTTCACACEST: gi|4714942|gb|AU056059.1|AU056059
genomic: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAGgtaattaatg ... tatcttgcagCATACACCCTTGGAACAATTGGATCGTAAGCATTTTGCCAAAGGTTCACAC
EST: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAG CATACACCCTTGGGAACAATTGGGATCGTAAGCATTTTGCCAAAGGTTCACEST: gi|66913816|gb|CX100664.1|CX100664
genomic: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAGgtaattaatg ... tatcttgcagCATACACCCTTGG-AACAATTGG-ATCGTAAGCATTTTGCCAAAGGTTCAC
EST: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAG CATACACCCTTGGAACAATTGGATCGTAAGCATTTTGCCAAAGGTTCACACEST: gi|218503878|gb|FG953739.1|FG953739
genomic: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAGgtaattaatg ... tatcttgcagCATACACCCTTGGAACAATTGGATCGTAAGCATTTTGCCAAAGGTTCACAC
EST: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAG CATACACCCTTGGAACAATTGGATCGTAAGCATTTTGCCAAAGGTTCACAC
genomic: AAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAGgtaattaatg ... tatcttgcagCATACACCCTTGGAACAATTGGATCGTAAGCATTTTGCCAAAGGTTCACAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTTTAGCTGCTCGTGGATTAAAAAGTGGTGGTACTGTTCAACAGCGTGCTGAGCGACTTTTCTTGTTGAAGgtaattaatgtacttttaaacctggatattcagctcatctttttttaaatatttaccaaatattctgaacttgtcgatgattatatcttgcag
- - - - - - - - - - - - - TGGTGG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TTGAAG