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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGgtaagctaatttccaggaccacggaagaatgaaagcattcaacactcaataatgctgcctttgtgcacactcttgtcacttttgtttaactacttgtaaaataatggcggcag

Basic information

species Oryza sativa
transcript LOC_Os02g36550.1
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os02g36550.1 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G002173_T01 (Zea mays), 5'ss of exon 6
AGGTGGAGGCCCTCTGGATATGAGGCTCAGTCAAGTTCCGAAAATGCTTTCAGTGTTGCGAAACCAATGGGCCCCCTTGGCGTTCTGTATATCATTTAAGgtaagctaatttccaggacca-cggaagaatgaaagcattcaacactcaataatgctgcctttgtgcacactcttgtcacttttgtttaactacttgtaaaataatggcggcag
||  |||||||| |||||||||| |||||| || ||||| ||||||||  | ||  |||| ||||| |||||||||||||| |||||  |||| || ||||| || |  | |  || |     | ||  |  |  ||||   |      | |      ||||| | || |||  |||   |||   | ||   | || |               
AGCCGGAGGCCCACTGGATATGAAGCTCAGCCAGGTTCCAAAAATGCTCCCCGTTCTGCGCAACCATTGGGCCCCCTTGGCCTTCTGCGTATCCTTCAAGgtgagtttgtctgtagaatgggtgaaaccaccacggcatgggat-tgggagagaaaaacctttatcca-acttgtgt---tttaaataaatggcatgcag--------------