1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCACCCACTGGACACGTTGAGACACATCCTCCTCTGAGTCAACCTGCTTCATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagcatgagttattatctaccatttctatgttagtacctctttgttattttagttgacagctagaaatatactctctccgtccccaaatataaga...
species | Oryza sativa |
transcript | LOC_Os02g08120.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GTGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAGEST: gi|29669563|gb|CB665838.1|CB665838
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGTTTCATTCATTTCAGEST: gi|51946147|gb|CV152488.1|CV152488
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCT-C--CAG------------CAGgttagaagca
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAGEST: gi|87027680|gb|CI274244.1|CI274244
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAGEST: gi|29638015|gb|CB643024.1|CB643024
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTGATTCCATAGGGGGTGATGGCAACCAAGCAGEST: gi|58667942|gb|CK056628.1|CK056628
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTTGATTCCATAGGGTATGATGGGCAACEST: gi|29668781|gb|CB665056.1|CB665056
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACT-GATTCCATAGGGTATGATGG-CAAC
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAGEST: gi|55409522|gb|CV721898.1|CV721898
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAGEST: gi|29622551|gb|CB627562.1|CB627562
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
EST: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAG GAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
genomic: ATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagca ... ttcatttcagGAGGAAGTGGAACTGGAACTGATTCCATAGGGTATGATGGCAACCAAGCAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCACCCACTGGACACGTTGAGACACATCCTCCTCTGAGTCAACCTGCTTCATACGAACAACGCATCTCATCAGCGAGCATGACAGGACCATCTCCAGCAGgttagaagcatgagttattatctaccatttctatgttagtacctctttgttattttagttgacagctagaaatatactctctccgtccccaaatataaga
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccgtccc