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ATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGTTCACACCTTTGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctctcaagttatctgcaactccacttatgttcaagtatttactattactagcgtagttcacatgcaatgcaaggatataaaaaaaatgtgtatt...
species | Oryza sativa |
transcript | LOC_Os02g07760.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCEST: gi|218492832|gb|FG951181.1|FG951181
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGC
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCGAEST: gi|88288968|gb|CI520298.1|CI520298
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|218492318|gb|FG946726.1|FG946726
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: AGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|88519470|gb|CI447124.1|CI447124
genomic: AGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|218490731|gb|FG966180.1|FG966180
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: CTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|66918914|gb|CX105762.1|CX105762
genomic: CTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: GCTCTTC-AGCT-GAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|218488132|gb|FG951352.1|FG951352
genomic: GCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|58694576|gb|CK083263.1|CK083263
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTAEST: gi|218491346|gb|FG955033.1|FG955033
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
EST: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCT GGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
genomic: TGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctct ... ttttatccagGGCGCAATAAATGTTGTGATGGGTAATGCTCCTGAGATAGGTGATGCTCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| ATTGGCTTGTGGCTGCACTGTCGTTGTCAAGCCATCAGAGTTCACACCTTTGACAGCACTTGCTGCAGCAGATCTTGCTCTTCAAGCTGGAATACCAGCTgtaattctctcaagttatctgcaactccacttatgttcaagtatttactattactagcgtagttcacatgcaatgcaaggatataaaaaaaatgtgtatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CTGCAG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCAGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - CAAGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - aaaaaaa