1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' | 9 5' 3' |
GCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaaatgtgtcttgtgagctgaaagcatggcagatccaagttgttagtaattgtagccccccacccagaatatgttgtctcacgttgttggttc...
species | Oryza sativa |
transcript | LOC_Os02g01720.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGEST: gi|88994869|gb|CI036450.1|CI036450
genomic: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
EST: ACCCGGTCCTTTTCACCTTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGEST: gi|29664288|gb|CB660563.1|CB660563
genomic: ACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
EST: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGEST: gi|25802938|gb|CA758899.1|CA758899
genomic: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
EST: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGEST: gi|88980837|gb|CI022527.1|CI022527
genomic: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
EST: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGEST: gi|88200565|gb|CI200415.1|CI200415
genomic: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
EST: TTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGGEST: gi|58687887|gb|CK076574.1|CK076574
genomic: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
EST: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAG GTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
genomic: GTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaa ... gtgttgtcagGTTTTCGAAGGATATGTTGGAGTATTACTTCTTAAGACGGCTTTGCACGGG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTAAAAGAATGGATGTTGTTGCTGGAGAAACAGCTGGTGTGGAAGGGCAGCTCTTGCTACTTTACCCGGTCCTTTTCACATTACAGgtatgtgtaaatgtgtcttgtgagctgaaagcatggcagatccaagttgttagtaattgtagccccccacccagaatatgttgtctcacgttgttggttc
- - - - - - - - - - - - - - - - - - - - TGGAAG
- - - - - - - - - - - - - - - - - - - - - - - GCAGCT
- - - - - - - - - - - - - - - - - - - - - - - - CAGCTC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ccccacc