1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
GCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcagctgcattcccagtatcgtttgatagctcatttccttttaatagattgcaactaaccattcatttactcatagcag
species | Oryza sativa |
transcript | LOC_Os01g70920.2 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|88842698|gb|CI081954.1|CI081954
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|88841982|gb|CI081238.1|CI081238
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|300216040|gb|HO088666.1|HO088666
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|88841996|gb|CI081252.1|CI081252
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|86537536|gb|CI177742.1|CI177742
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGCAGEST: gi|86414242|gb|CI068645.1|CI068645
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATAC-A--AGgtaaactcag ... ctcatagc
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|29656964|gb|CB653239.1|CB653239
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATTTTTTGGACAGATGCAGTCGCTTGACAATTGACAATEST: gi|25806675|gb|CA762636.1|CA762636
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
EST: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAG ACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
genomic: ATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcag ... ctcatagcagACTGTAGAGGATGATCTTCTGGACAGATGCAGTCGCTTGACAATTGACAAT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCTGTTAGTGCTCCATTGATGCAAGCTTATGAAAACTATACGAAAGAGAAACATATTGGTGGTCAAGTTTTGCTTCAAACATACAAGgtaaactcagctgcattcccagtatcgtttgatagctcatttccttttaatagattgcaactaaccattcatttactcatagcag
- - - - - - - - - - - - - - - - - - - - - AAGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - TGGTGG