1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' | 8 5' 3' |
CCTCCTGAAGTCTGGAACGGTGGCGTTGGGTTTGTGTCACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactcaaatcttcattttcggaacctcttgtttagaaagaagtttttgctttctgtatggtgtctcaacctggacacttacatataatatgtgtttaattgttccag
species | Oryza sativa |
transcript | LOC_Os01g59930.1 |
intron # | 8 |
splice site | 5' |
intron type | U2 |
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGAC-TTCAA ATCTTGAGGTGTGGTCCTCCTC-GATGAACA-GGCAATGGCTGCGCACCTTEST: gi|88200209|gb|CI200059.1|CI200059
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|15852322|gb|BI805118.1|BI805118
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|27576200|gb|CA998894.1|CA998894
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88201419|gb|CI201774.1|CI201774
genomic: CCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|3767653|gb|AU031680.1|AU031680
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAAT-GNTGCGCACCTTEST: gi|88987863|gb|CI017952.1|CI017952
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88214448|gb|CI214297.1|CI214297
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|58689499|gb|CK078186.1|CK078186
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88832171|gb|CI017405.1|CI017405
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|11171266|gb|AU163705.1|AU163705
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88839184|gb|CI378108.1|CI378108
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88214584|gb|CI214433.1|CI214433
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|86883521|gb|CI338070.1|CI338070
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTCEST: gi|58678583|gb|CK067270.1|CK067270
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|56158135|gb|C73512.2|C73512
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88992675|gb|CI035691.1|CI035691
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88848493|gb|CI087015.1|CI087015
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88847923|gb|CI006109.1|CI006109
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|86418467|gb|CI032676.1|CI032676
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|58608501|gb|CK036534.1|CK036534
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|88988656|gb|CI039075.1|CI039075
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTTEST: gi|86545731|gb|CI185937.1|CI185937
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
EST: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAA ATCTTGAGGTGTGGTCCTCCTCCGATGTACAAGGCAATGGCTGCGCACCTT
genomic: CACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactca ... attgttccagATCTTGAGGTGTGGTCCTCCTCCGATGAACAAGGCAATGGCTGCGCACCTT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| CCTCCTGAAGTCTGGAACGGTGGCGTTGGGTTTGTGTCACAGGACATGATTAAAGCTCATTTGCCAGCACCTGCCGAGGACATTCAAgtaaaactcaaatcttcattttcggaacctcttgtttagaaagaagtttttgctttctgtatggtgtctcaacctggacacttacatataatatgtgtttaattgttccag
- - - - - - - - - - - - - - - - - - - - - - - - - - AGCTCA