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Data associated with selected splice site

Sequence

 atgc   intronic sequence     ATGC   exonic sequence

AGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGGATACTGTTACATTTAAGgtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcag

Basic information

species Oryza sativa
transcript LOC_Os01g46510.2
intron # 8
splice site 5'
intron type U2

Orthologous splice sites


 atgc   intronic sequence     ATGC   exonic sequence


upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 8
lower sequence: GRMZM2G000177_T01 (Zea mays), 5'ss of exon 8
AGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGGATACTGTTACATTTAAGgtatactcac---tatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcag
||||||||||||||||||| |||| ||||| ||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||| || ||||||     |    ||||| | ||   || |||| |    || |||||| | | ||||||||   |||| || || |  ||  |||
AGTTGCAGTTGAACTTTCAAGGGTGATGGGGAGTGCTCCACAGCTCATTACAATAGGGGCTGATAAAACTTTAGCCATATGGGATACTGTTACTTTCAAGgtacttatataaatatttgcatgaagttatattat----ttattatttcaagtagagcttaa--agtaacacatttgctgctcag

upper sequence: LOC_Os01g46510.2 (Oryza sativa), 5'ss of exon 8
lower sequence: AT5G24710.1 (Arabidopsis thaliana), 5'ss of exon 8
AGTTGCAGTTGAACTTTCACGGGTAATGGGAAGTGCTCCACAACTCATTACAATAGGGGCTGACAAAACTTTAGCCATATGGGATACTGTTACATTTAAGgtatactcactatttccgtgtgattgtattttttttttgttatttaaggaagagcttatgcagtagcatatcttttgtgcag
 || || ||||| || ||| ||||||  || |||||||||||| | |||||||| ||||||||||| || || ||||||||||||||  | ||||||||||||          |   || ||  | | |  | ||||    || | |   |      |||||     |  | | || | |||
GGTGGCTGTTGAGCTGTCAAGGGTAAGTGGGAGTGCTCCACAATTGATTACAATTGGGGCTGACAAGACATTGGCCATATGGGATACAATGACATTTAAGgtaatggtgtatctcatgtatggatttttcatattttcccgatctcatttattaac-atgcatatctacttttattctacag