1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GCAGTGGGCTCTCCTGGCTGGCTTCCTATGTGGCTTTGGCAATGGGTTTCAGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaatctccaaatcttatcatttcttcacatcagaagagaaattcatcgtgttcgcgatggctgtggcgagattctagatctttcagacaaatt...
species | Oryza sativa |
transcript | LOC_Os12g31850.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AGTTCATGGGTGTTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|86435471|gb|CI106704.1|CI106704
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: GCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|86491003|gb|CI133636.1|CI133636
genomic: GCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: CTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|33663042|gb|CF294009.1|CF294009
genomic: CTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|58690012|gb|CK078699.1|CK078699
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|89175612|gb|CI042633.1|CI042633
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: GCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAEST: gi|29686849|gb|CB683124.1|CB683124
genomic: GCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTT-GTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTA
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|88248806|gb|CI247890.1|CI247890
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29644126|gb|CB649133.1|CB649133
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29614659|gb|CB619672.1|CB619672
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29644127|gb|CB649134.1|CB649134
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGTTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29614657|gb|CB619670.1|CB619670
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29616336|gb|CB621348.1|CB621348
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29616334|gb|CB621346.1|CB621346
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|3766608|gb|AU030718.1|AU030718
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGNTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29670769|gb|CB667044.1|CB667044
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|88224848|gb|CI224370.1|CI224370
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: TTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|58692197|gb|CK080884.1|CK080884
genomic: TTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|58692029|gb|CK080716.1|CK080716
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGTTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|89184030|gb|CI046595.1|CI046595
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: GCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|88840066|gb|CI079520.1|CI079520
genomic: GCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: TGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29665275|gb|CB661550.1|CB661550
genomic: TGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29669404|gb|CB665679.1|CB665679
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|88274779|gb|CI395185.1|CI395185
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: GATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|89177386|gb|CI250835.1|CI250835
genomic: GATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|86259161|gb|CI010462.1|CI010462
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|88248216|gb|CI248065.1|CI248065
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|86497966|gb|CI140599.1|CI140599
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: GGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|29676246|gb|CB672521.1|CB672521
genomic: GGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTACEST: gi|89184119|gb|CI046684.1|CI046684
genomic: AGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
EST: GCTATGCTGCTGCTGATGCTGTCCAG GCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
genomic: GCTATGCTGCTGCTGATGCTGTCCAGgttagtccaa ... gtttcatcagGCATTGCCACTTGTGAGCACATTCTGGGGAATACTCCTGTTTGGGGAGTAC
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GCAGTGGGCTCTCCTGGCTGGCTTCCTATGTGGCTTTGGCAATGGGTTTCAGTTCATGGGTGGTCAGGCTGCTGGCTATGCTGCTGCTGATGCTGTCCAGgttagtccaatctccaaatcttatcatttcttcacatcagaagagaaattcatcgtgttcgcgatggctgtggcgagattctagatctttcagacaaatt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - TGCTGC
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGCT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - GCTGAT
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - ATGCTG