1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGATGCCAATGGTATTCTCTCTGTTGCTGCTATTGATAAGGGTACTGGGAAGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttcccaccttatttgcttaagcattgtgtgattacattcatcaaaagttggttgccagcttgctatattgcaactaggtacaaagttggcaagtt...
species | Oryza sativa |
transcript | LOC_Os12g14070.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: CAAAGGATGAG GTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAGEST: gi|29613316|gb|CB618329.1|CB618329
genomic: CAAAGGATGAGgtatgttccc ... gtgtttgtagGTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
EST: AGAAACAGGATATCACCATCACTGGCGCTAGTACACTGCCAAAGGATGAG GTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAGEST: gi|29614004|gb|CB619017.1|CB619017
genomic: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttccc ... gtgtttgtagGTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
EST: AGAAACAGGATATCACCATCACTGGCGGTAGTACACTGCCAAAGGATGAG GTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAGEST: gi|29658319|gb|CB654594.1|CB654594
genomic: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttccc ... gtgtttgtagGTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
EST: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAG GTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAGEST: gi|29627785|gb|CB632796.1|CB632796
genomic: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttccc ... gtgtttgtagGTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
EST: AGAAACAGGATATCACCATCACTGGCGCTAGTACACTGCCAAAGGATGAG GTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAGEST: gi|29673219|gb|CB669494.1|CB669494
genomic: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttccc ... gtgtttgtagGTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
EST: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAG GTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
genomic: AGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttccc ... gtgtttgtagGTTGAGAGAATGGTGGAAGAGGCTGACAAGTTTGCTCAGGAGGACAAAGAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGATGCCAATGGTATTCTCTCTGTTGCTGCTATTGATAAGGGTACTGGGAAGAAACAGGATATCACCATCACCGGCGCTAGTACACTGCCAAAGGATGAGgtatgttcccaccttatttgcttaagcattgtgtgattacattcatcaaaagttggttgccagcttgctatattgcaactaggtacaaagttggcaagtt
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AGGATG
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - tcccacc