1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggccaatgttaccactaacaaaaaaggcatcactaata...
species | Oryza sativa |
transcript | LOC_Os12g06810.3 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|87005839|gb|CI316258.1|CI316258
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: CAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGGTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|88995547|gb|CI022870.1|CI022870
genomic: CAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|58685416|gb|CK074103.1|CK074103
genomic: AAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCCAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|88840572|gb|CI080026.1|CI080026
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: TGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|86497544|gb|CI140177.1|CI140177
genomic: TGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: ACCATGGCAAAAATTGAAACCTTCTGTAGACG-TATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|86885229|gb|CI316989.1|CI316989
genomic: ACCATGGCAAAAATTGAAACCTTCTGTAGA-GATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: TTGTGTAACAGCCAG GTTTTGTCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|86257359|gb|CI004177.1|CI004177
genomic: TTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|27554489|gb|CA998389.1|CA998389
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|86875063|gb|CI322284.1|CI322284
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATT-AAACCTTCTGTAGAGATATTGTGTAACAGCCAG G-TTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|29666969|gb|CB663244.1|CB663244
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|29683579|gb|CB679854.1|CB679854
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|58600096|gb|CK010624.1|CK010624
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTAGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGEST: gi|86477800|gb|CI120433.1|CI120433
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|29670914|gb|CB667189.1|CB667189
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|87017850|gb|CI273872.1|CI273872
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: CCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|88842028|gb|CI081284.1|CI081284
genomic: CCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: ACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|88969566|gb|CI383072.1|CI383072
genomic: ACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCTTCTGTAGAGATATTTTGTAACACCCAG GTTTTCGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|86481704|gb|CI124337.1|CI124337
genomic: AACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAGEST: gi|88960789|gb|CI382470.1|CI382470
genomic: AACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
EST: TGTGTAACAGCCAG GTTTTGGCACCCGAAATGAGCTTGGCCACAGTCCGGGCTTATGTCTGGAAG
genomic: TGTGTAACAGCCAGgcaagtattt ... tatgaagcagGTTTTGGCACCCGAAATGAGCTTGGCCACAGTGCGGGCTTATGTCTGGAAG
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| TGGCCAATCACAATTTTCAGCGCTAGATAGTTCTTCACGGCTTGGACTAAAACCATGGCAAAAATTGAAACCTTCTGTAGAGATATTGTGTAACAGCCAGgcaagtatttctaaattcaactgttgtttctttctttctatgtactgttcccctttgctgagggccaatgttaccactaacaaaaaaggcatcactaata
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