1 5' 3' | 2 5' 3' | 3 5' 3' | 4 5' 3' | 5 5' 3' | 6 5' 3' | 7 5' 3' |
GTTGAAGTCAACACTTCACTTCTGTTCGGTGTTGAAGATGACATGGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataattttgactacttccatggatttatgatctcactattaatttctacgataagttactggttttttagtgtactgactaccgaaaatgaaaattct...
species | Oryza sativa |
transcript | LOC_Os11g42510.1 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|88480442|gb|CI417713.1|CI417713
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: AAGAAGAATCTGTCCTANTTTTACCTG GTTCTGTAATTGGGGTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|86854440|gb|CI256562.1|CI256562
genomic: AAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|29636664|gb|CB641673.1|CB641673
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|14980581|gb|BI305259.1|BI305259
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCCCCTAEST: gi|29673666|gb|CB669941.1|CB669941
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|16577953|gb|BI812048.1|BI812048
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|29636535|gb|CB641544.1|CB641544
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|88220047|gb|CI219607.1|CI219607
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|29636663|gb|CB641672.1|CB641672
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|88991628|gb|CI019806.1|CI019806
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|29670359|gb|CB666634.1|CB666634
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|29668799|gb|CB665074.1|CB665074
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTAEST: gi|58595127|gb|CF993435.1|CF993435
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
EST: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTG GTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
genomic: GGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataatttt ... ccttgcacagGTTCTGTAATTGGGTTAAAGAACTGGATTAGGATATTCTTTGGGGCACCTA
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GTTGAAGTCAACACTTCACTTCTGTTCGGTGTTGAAGATGACATGGACTTCGCTCGTGAATTGATTAAAGAAGAATCTGTCCTAGTTTTACCTGgtataattttgactacttccatggatttatgatctcactattaatttctacgataagttactggttttttagtgtactgactaccgaaaatgaaaattct
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAAGAA
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - AAGAAG