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GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCAACAGCAATTAAAGGTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttttgcctttcttatagaatccttgttgaaatagtttgatgatctgccaataaagttccttccagaaacagggcttgttgattcagtaggagc...
species | Oryza sativa |
transcript | LOC_Os11g33240.2 |
intron # | 7 |
splice site | 5' |
intron type | U2 |
EST: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAG GTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGTEST: gi|33793807|gb|CF322790.1|CF322790
genomic: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttt ... tttgtttcagGTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGT
EST: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAG GTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGTEST: gi|38470398|gb|CF954529.1|CF954529
genomic: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttt ... tttgtttcagGTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGT
EST: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTAGACTGGAAAG GTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGTEST: gi|86904765|gb|CI310558.1|CI310558
genomic: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttt ... tttgtttcagGTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGT
EST: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAG GTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGT
genomic: GTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttt ... tttgtttcagGTGCCAACCAAAGAGCAAGTCGATGCTCTATCAAAGGAATTGGTTACCCGT
atgc | intron | ATGC | exonic elements by Pertea et al. |
ATGC | exon | atgc | putative intronic elements |
ATGC | putative exonic elements identified for retained introns |
10 20 30 40 50 60 70 80 90 100 110 120 130 140 150 160 170 180 190 200 210 220 ---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------|---------| GGGTCTCTCGATTCCAGAGTGCCAGAAAGTGCTGCCAACAGCAATTAAAGGTGGAGAACCTTTGCCGGAGGGTCTCCTTTGGCTTCTTTTGACTGGAAAGgtttggcttttgcctttcttatagaatccttgttgaaatagtttgatgatctgccaataaagttccttccagaaacagggcttgttgattcagtaggagc
- - - - - - - - - - - - - - - - - - - - - - - - - GTGGAG
- - - - - - - - - - - - - - - - - - - - - - - - - TGGAGA
- - - - - - - - - - - - - - - - - - - - - - - - - - GGAGAA